› 6s5f

X-ray diffraction
1.7Å resolution

Structure of the human RAB39B in complex with GMPPNP

Released:
DOI: 10.2210/pdb6s5f/pdb
PDB entry 6s5f coloured by chain, front view.
PDB entry 6s5f coloured by chain, side view.
PDB entry 6s5f coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Diaz-Saez L, Jung S, von Delft F, Arrowsmith CH, Edwards A, Bountra C, Huber K, Structural Genomics Consortium (SGC)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-188432 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ras-related protein Rab-39B Chain: A
Molecule details ›
Chain: A
Length: 208 amino acids
Theoretical weight: 23.98 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q96DA2 (Residues: 1-207; Coverage: 97%)
Gene name: RAB39B
Sequence domains: Ras family

Ligands and Environments

4 bound ligands:
Ligand GLY 1 x GLY
Ligand GNP 1 x GNP
Ligand EDO 1 x EDO
Ligand MG 1 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P2
Unit cell:
a: 52.725Å b: 35.285Å c: 53.605Å
α: 90° β: 107.51° γ: 90°
R-values:
R R work R free
0.186 0.184 0.229
Expression system: Escherichia coli

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