› 6s5u

X-ray diffraction
2.03Å resolution

Strictosidine Synthase from Ophiorrhiza pumila in complex with N-[2-(1H-Indol-3-yl)ethyl]-3-methyl-1-butanamine

Released:
DOI: 10.2210/pdb6s5u/pdb
PDB entry 6s5u coloured by chain, front view.
PDB entry 6s5u coloured by chain, side view.
PDB entry 6s5u coloured by chain, top view.
Source organism: Ophiorrhiza pumila
Primary publication:
Inverted Binding of Non-natural Substrates in Strictosidine Synthase Leads to a Switch of Stereochemical Outcome in Enzyme-Catalyzed Pictet-Spengler Reactions.
Eger E, Simon A, Sharma M, Yang S, Breukelaar WB, Grogan G, Houk KN, Kroutil W
J Am Chem Soc 142 792-800 (2020)
PMID: 31909617

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-188243 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Strictosidine synthase conserved region domain-containing protein Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 331 amino acids
Theoretical weight: 36.77 KDa
Source organism: Ophiorrhiza pumila
Expression system: Escherichia coli
UniProt:
  • Canonical: Q94LW9 (Residues: 25-351; Coverage: 100%)
Gene name: str
Sequence domains:

Ligands and Environments

1 bound ligand:
Ligand KWK 13 x KWK
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I04-1
Spacegroup: P31
Unit cell:
a: 125.747Å b: 125.747Å c: 117.081Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.313 0.312 0.334
Expression system: Escherichia coli

Quick links

Citations

4 review citations

Recent trends in biocatalysis.
Yi et al. (2021)
3 more