› 6sdr

X-ray diffraction
2.1Å resolution

W-formate dehydrogenase from Desulfovibrio vulgaris - Oxidized form

Released:
DOI: 10.2210/pdb6sdr/pdb
Model geometry
Fit model/data
PDB entry 6sdr coloured by chain, front view.
PDB entry 6sdr coloured by chain, side view.
PDB entry 6sdr coloured by chain, top view.
Source organism: Nitratidesulfovibrio vulgaris str. Hildenborough
Primary publication:
Towards the mechanistic understanding of enzymatic CO2 reduction
Oliveira AR, Mota C, Mourato C, Domingos RM, Santos MFA, Gesto D, Guigliarelli B, Santos-Silva T, Romao MJ, Pereira IC
ACS Catalysis (2020)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-180797 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
4Fe-4S Mo/W bis-MGD-type domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 1005 amino acids
Theoretical weight: 111.39 KDa
Source organism: Nitratidesulfovibrio vulgaris str. Hildenborough
UniProt:
  • Canonical: Q72EJ1 (Residues: 1-1005; Coverage: 100%)
Gene names: DVU_0587, fdnG-1
Sequence domains:
4Fe-4S ferredoxin-type domain-containing protein Chain: B
Molecule details ›
Chain: B
Length: 236 amino acids
Theoretical weight: 26.48 KDa
Source organism: Nitratidesulfovibrio vulgaris str. Hildenborough
UniProt:
  • Canonical: Q72EJ0 (Residues: 1-236; Coverage: 100%)
Gene name: DVU_0588
Sequence domains: 4Fe-4S dicluster domain

Ligands and Environments


Cofactor: Ligand MGD 2 x MGD
4 bound ligands:
Ligand SF4 4 x SF4
Ligand GOL 5 x GOL
Ligand H2S 1 x H2S
Ligand W 1 x W
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: ESRF BEAMLINE ID29
Spacegroup: P212121
Unit cell:
a: 64.593Å b: 127.644Å c: 148.213Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.188 0.186 0.226

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