› 6shl

Electron Microscopy
3.1Å resolution

Structure of a marine algae virus of the order Picornavirales

Released:
DOI: 10.2210/pdb6shl/pdb
PDB entry 6shl coloured by chain, front view.
PDB entry 6shl coloured by chain, side view.
PDB entry 6shl coloured by chain, top view.
Source organism: Chaetoceros tenuissimus RNA virus type II
Primary publication:
Capsid Structure of a Marine Algal Virus of the Order Picornavirales.
Munke A, Kimura K, Tomaru Y, Okamoto K
J Virol 94 (2020)
PMID: 32024776
Related structures: EMD-10200

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 240-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-101017 (preferred)
Entry contents:
4 distinct polypeptide molecules
Macromolecules (4 distinct):
Capsid protein Chain: A
Molecule details ›
Chain: A
Length: 267 amino acids
Theoretical weight: 29.74 KDa
Source organism: Chaetoceros tenuissimus RNA virus type II
UniProt:
  • Canonical: A0A0B6VJB4 (Residues: 603-869; Coverage: 31%)
Sequence domains: CRPV capsid protein like
Capsid protein Chain: B
Molecule details ›
Chain: B
Length: 231 amino acids
Theoretical weight: 25.91 KDa
Source organism: Chaetoceros tenuissimus RNA virus type II
UniProt:
  • Canonical: A0A0B6VJB4 (Residues: 2-232; Coverage: 27%)
Capsid protein Chain: C
Molecule details ›
Chain: C
Length: 262 amino acids
Theoretical weight: 28.51 KDa
Source organism: Chaetoceros tenuissimus RNA virus type II
UniProt:
  • Canonical: A0A0B6VJB4 (Residues: 325-586; Coverage: 30%)
Capsid protein Chain: D
Molecule details ›
Chain: D
Length: 51 amino acids
Theoretical weight: 5.41 KDa
Source organism: Chaetoceros tenuissimus RNA virus type II
UniProt:
  • Canonical: A0A0B6VJB4 (Residues: 274-324; Coverage: 6%)
Sequence domains: Cricket paralysis virus, VP4

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.1Å
Relevant EMDB volumes: EMD-10200

Quick links

Citations

2 review citations

RNA Viruses in Aquatic Unicellular Eukaryotes.
Sadeghi et al. (2021)
1 more

2 mentions without citation

Capsid Structure of a Marine Algal Virus of the Order Picornavirales.
Munke et al. (2020)
1 more