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› 6svj

X-ray diffraction
1.16Å resolution

Terahertz irradiated structure of bovine trypsin (odd frames of crystal x42)

Released:
DOI: 10.2210/pdb6svj/pdb
Model geometry
Fit model/data
PDB entry 6svj coloured by chain, front view.
PDB entry 6svj coloured by chain, side view.
PDB entry 6svj coloured by chain, top view.
Source organism: Bos taurus
Primary publication:
Clustering of atomic displacement parameters in bovine trypsin reveals a distributed lattice of atoms with shared chemical properties.
Gagnér VA, Lundholm I, Garcia-Bonete MJ, Rodilla H, Friedman R, Zhaunerchyk V, Bourenkov G, Schneider T, Stake J, Katona G
OpenAccess logo Sci Rep 9 19281 (2019)
PMID: 31848402

Function and Biology Details

Reaction catalysed: 
Preferential cleavage: Arg-|-Xaa, Lys-|-Xaa.
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-133319 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Serine protease 1 Chain: A
Molecule details ›
Chain: A
Length: 223 amino acids
Theoretical weight: 23.32 KDa
Source organism: Bos taurus
UniProt:
  • Canonical: P00760 (Residues: 24-246; Coverage: 97%)
Gene names: PRSS1, TRP1, TRY1, TRYP1
Sequence domains: Trypsin

Ligands and Environments

3 bound ligands:
Ligand CA 1 x CA
Ligand BEN 1 x BEN
Ligand SO4 2 x SO4
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Spacegroup: P212121
Unit cell:
a: 53.91Å b: 57.15Å c: 65.7Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.15 0.15 0.192

Quick links

Citations

1 citations in other articles

Chemical Mapping Exposes the Importance of Active Site Interactions in Governing the Temperature Dependence of Enzyme Turnover.
Winter et al. (2021)

2 mentions without citation

Clustering of atomic displacement parameters in bovine trypsin reveals a distributed lattice of atoms with shared chemical properties.
Gagnér et al. (2019)
1 more