6tui

Electron Microscopy
10.47Å resolution

Virion of empty GTA particle

Released:
Related structures: EMD-10592

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 270-mer (preferred)
PDBe Complex ID:
PDB-CPX-112665 (preferred)
Entry contents:
8 distinct polypeptide molecules
Macromolecules (8 distinct):
Phage major capsid protein, HK97 family Chains: A4, A5, B4, B5, C4, C5, D4, E4, F4, G4, H4, I4, J4, K4, L4, M4, N4, O4, P4, Q4, R4, S4, T4, U4, V4, W4, X4, Y4, Z4
Molecule details ›
Chains: A4, A5, B4, B5, C4, C5, D4, E4, F4, G4, H4, I4, J4, K4, L4, M4, N4, O4, P4, Q4, R4, S4, T4, U4, V4, W4, X4, Y4, Z4
Length: 385 amino acids
Theoretical weight: 40.89 KDa
Source organism: Rhodobacter capsulatus SB 1003
UniProt:
  • Canonical: D5ATZ3 (Residues: 13-397; Coverage: 97%)
Gene name: RCAP_rcc01687
Sequence domains: Phage capsid family
Uncharacterized protein Chains: A1, A2, A3, B2, B3, C2, C3, D2, D3, E2, E3
Molecule details ›
Chains: A1, A2, A3, B2, B3, C2, C3, D2, D3, E2, E3
Length: 84 amino acids
Theoretical weight: 9.1 KDa
Source organism: Rhodobacter capsulatus SB 1003
UniProt:
  • Canonical: D5AR33 (Residues: 1-84; Coverage: 100%)
Gene name: RCAP_rcc01079
Uncharacterized protein Chains: F2, F3
Molecule details ›
Chains: F2, F3
Length: 325 amino acids
Theoretical weight: 33 KDa
Source organism: Rhodobacter capsulatus SB 1003
UniProt:
  • Canonical: D5AR34 (Residues: 1-325; Coverage: 100%)
Gene name: RCAP_rcc01080
Phage major tail protein, TP901-1 family Chains: G, H, I, J
Molecule details ›
Chains: G, H, I, J
Length: 137 amino acids
Theoretical weight: 14.42 KDa
Source organism: Rhodobacter capsulatus SB 1003
UniProt:
  • Canonical: D5ATZ7 (Residues: 1-137; Coverage: 100%)
Gene name: RCAP_rcc01691
Sequence domains: Phage tail tube protein
Gene transfer agent protein Chains: C, D
Molecule details ›
Chains: C, D
Length: 197 amino acids
Theoretical weight: 20.96 KDa
Source organism: Rhodobacter capsulatus SB 1003
UniProt:
  • Canonical: D5ATZ4 (Residues: 1-197; Coverage: 100%)
Gene name: RCAP_rcc01688
Phage portal protein, HK97 family Chains: A, B
Molecule details ›
Chains: A, B
Length: 396 amino acids
Theoretical weight: 42.85 KDa
Source organism: Rhodobacter capsulatus SB 1003
UniProt:
  • Canonical: D5ATZ0 (Residues: 1-396; Coverage: 100%)
Gene name: RCAP_rcc01684
Sequence domains: Phage portal protein
DUF3168 domain-containing protein Chain: F
Molecule details ›
Chain: F
Length: 135 amino acids
Theoretical weight: 13.87 KDa
Source organism: Rhodobacter capsulatus SB 1003
UniProt:
  • Canonical: D5ATZ6 (Residues: 1-135; Coverage: 100%)
Gene name: RCAP_rcc01690
Sequence domains: Protein of unknown function (DUF3168)
Head-tail adaptor protein Chain: E
Molecule details ›
Chain: E
Length: 112 amino acids
Theoretical weight: 12.4 KDa
Source organism: Rhodobacter capsulatus SB 1003
UniProt:
  • Canonical: D5ATZ5 (Residues: 1-112; Coverage: 100%)
Gene name: RCAP_rcc01689
Sequence domains: Phage head-tail joining protein

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 10.47Å
Relevant EMDB volumes: EMD-10592