› 6ubl

X-ray diffraction
1.5Å resolution

Structure of DynF from the Dynemicin Biosynthesis Pathway of Micromonospora chersina

Released:
DOI: 10.2210/pdb6ubl/pdb
PDB entry 6ubl coloured by chain, front view.
PDB entry 6ubl coloured by chain, side view.
PDB entry 6ubl coloured by chain, top view.
Source organism: Micromonospora chersina
Primary publication:
The crystal structure of DynF from the dynemicin-biosynthesis pathway of Micromonospora chersina.
Kosgei AJ, Miller MD, Bhardwaj M, Xu W, Thorson JS, Van Lanen SG, Phillips GN
Acta Crystallogr F Struct Biol Commun 78 1-7 (2022)
PMID: 34981769

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-109483 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Unkown protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 211 amino acids
Theoretical weight: 22.71 KDa
Source organism: Micromonospora chersina
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: B2BM43 (Residues: 1-210; Coverage: 100%)
Gene name: GA0070603_4197
Sequence domains: Family of unknown function (DUF6073)

Ligands and Environments

1 bound ligand:
Ligand PLM 2 x PLM
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-B
Spacegroup: C2221
Unit cell:
a: 59.83Å b: 116.126Å c: 129.877Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.162 0.161 0.185
Expression system: Escherichia coli BL21(DE3)

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Citations

1 mention without citation

The crystal structure of DynF from the dynemicin-biosynthesis pathway of Micromonospora chersina.
Kosgei et al. (2022)