› 6v3d

Electron Microscopy
2.95Å resolution

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 30-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-236580 (preferred)
Entry contents:
28 distinct polypeptide molecules
2 distinct RNA molecules
Macromolecules (30 distinct):
Large ribosomal subunit protein bL33 Chain: 0
Molecule details ›
Chain: 0
Length: 51 amino acids
Theoretical weight: 6.11 KDa
Source organism: Acinetobacter sp. CIP 51.11
UniProt:
  • Canonical: N9PPR9 (Residues: 1-51; Coverage: 100%)
Gene names: F894_00620, rpmG
Sequence domains: Ribosomal protein L33
Large ribosomal subunit protein bL34 Chain: 1
Molecule details ›
Chain: 1
Length: 44 amino acids
Theoretical weight: 5.19 KDa
Source organism: Acinetobacter beijerinckii ANC 3835
UniProt:
  • Canonical: N9DYI8 (Residues: 1-44; Coverage: 100%)
Gene names: F934_02549, rpmH
Sequence domains: Ribosomal protein L34
Large ribosomal subunit protein bL35 Chain: 2
Molecule details ›
Chain: 2
Length: 64 amino acids
Theoretical weight: 7.42 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7I693 (Residues: 1-64; Coverage: 100%)
Gene names: AB57_0700, rpmI
Sequence domains: Ribosomal protein L35
Large ribosomal subunit protein bL36 Chain: 3
Molecule details ›
Chain: 3
Length: 38 amino acids
Theoretical weight: 4.28 KDa
Source organism: Acinetobacter sp. ANC 4470
UniProt:
  • Canonical: A0A1Y3CHB1 (Residues: 1-38; Coverage: 100%)
Gene names: B9T25_11870, rpmJ
Sequence domains: Ribosomal protein L36
Large ribosomal subunit protein uL2 Chain: C
Molecule details ›
Chain: C
Length: 274 amino acids
Theoretical weight: 30.35 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA36 (Residues: 1-274; Coverage: 100%)
Gene names: AB57_3527, rplB
Sequence domains:
Large ribosomal subunit protein uL3 Chain: D
Molecule details ›
Chain: D
Length: 212 amino acids
Theoretical weight: 22.51 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA39 (Residues: 1-212; Coverage: 100%)
Gene names: AB57_3530, rplC
Sequence domains: Ribosomal protein L3
Large ribosomal subunit protein uL4 Chain: E
Molecule details ›
Chain: E
Length: 200 amino acids
Theoretical weight: 21.58 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA38 (Residues: 1-200; Coverage: 100%)
Gene names: AB57_3529, rplD
Sequence domains: Ribosomal protein L4/L1 family
Large ribosomal subunit protein uL5 Chain: F
Molecule details ›
Chain: F
Length: 178 amino acids
Theoretical weight: 20.05 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA27 (Residues: 1-178; Coverage: 100%)
Gene names: AB57_3518, rplE
Sequence domains:
Large ribosomal subunit protein uL6 Chain: G
Molecule details ›
Chain: G
Length: 177 amino acids
Theoretical weight: 19.13 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA24 (Residues: 1-177; Coverage: 100%)
Gene names: AB57_3515, rplF
Sequence domains: Ribosomal protein L6
Large ribosomal subunit protein bL9 Chain: H
Molecule details ›
Chain: H
Length: 148 amino acids
Theoretical weight: 15.8 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IBC3 (Residues: 1-148; Coverage: 100%)
Gene names: AB57_2511, rplI
Sequence domains:
Large ribosomal subunit protein uL13 Chain: I
Molecule details ›
Chain: I
Length: 142 amino acids
Theoretical weight: 15.98 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7I9B0 (Residues: 1-142; Coverage: 100%)
Gene names: AB57_3451, rplM
Sequence domains: Ribosomal protein L13
Large ribosomal subunit protein uL14 Chain: J
Molecule details ›
Chain: J
Length: 122 amino acids
Theoretical weight: 13.52 KDa
UniProt:
  • Canonical: N9NZ44 (Residues: 1-122; Coverage: 100%)
Gene names: F897_01028, F969_03557, IAQ69_12965, rplN
Sequence domains: Ribosomal protein L14p/L23e
Large ribosomal subunit protein uL15 Chain: K
Molecule details ›
Chain: K
Length: 146 amino acids
Theoretical weight: 15.51 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA20 (Residues: 1-146; Coverage: 100%)
Gene names: AB57_3511, rplO
Sequence domains: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Large ribosomal subunit protein uL16 Chain: L
Molecule details ›
Chain: L
Length: 137 amino acids
Theoretical weight: 15.5 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA32 (Residues: 1-137; Coverage: 100%)
Gene names: AB57_3523, rplP
Sequence domains: Ribosomal protein L16p/L10e
Large ribosomal subunit protein bL17 Chain: M
Molecule details ›
Chain: M
Length: 125 amino acids
Theoretical weight: 14.02 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA13 (Residues: 1-125; Coverage: 100%)
Gene names: AB57_3504, rplQ
Sequence domains: Ribosomal protein L17
Large ribosomal subunit protein uL18 Chain: N
Molecule details ›
Chain: N
Length: 116 amino acids
Theoretical weight: 12.44 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA23 (Residues: 1-116; Coverage: 100%)
Gene names: AB57_3514, rplR
Sequence domains: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Large ribosomal subunit protein bL19 Chain: O
Molecule details ›
Chain: O
Length: 122 amino acids
Theoretical weight: 13.62 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IAS9 (Residues: 1-122; Coverage: 100%)
Gene names: AB57_3615, rplS
Sequence domains: Ribosomal protein L19
Large ribosomal subunit protein bL20 Chain: P
Molecule details ›
Chain: P
Length: 119 amino acids
Theoretical weight: 13.47 KDa
Source organism: Acinetobacter baumannii
UniProt:
  • Canonical: V5VGC9 (Residues: 1-119; Coverage: 100%)
Gene names: A7M90_00135, ABR2091_0624, ABUW_3284, APD17_02025, AUO97_10420, B9W25_05540, B9X95_03065, CAS83_19455, CBE85_16220, CV954_016800, DOL94_09815, EA686_12335, EA706_04480, EA722_13770, F2P40_14925, F4T85_10105, FJU42_08615, G3N53_02985, GNY86_20015, GSE42_03220, IAG11_09365, IMO23_03050, ITE13_07970, JHZ39_000459, MKP18_001477, P9867_10845, SAMEA104305318_00030, SAMEA4394745_03106, rplT
Sequence domains: Ribosomal protein L20
Large ribosomal subunit protein bL21 Chain: Q
Molecule details ›
Chain: Q
Length: 103 amino acids
Theoretical weight: 11.5 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7I6V9 (Residues: 1-103; Coverage: 100%)
Gene names: AB57_3151, rplU
Sequence domains: Ribosomal prokaryotic L21 protein
Large ribosomal subunit protein uL22 Chain: R
Molecule details ›
Chain: R
Length: 109 amino acids
Theoretical weight: 11.83 KDa
Source organism: Acinetobacter sp. 809848
UniProt:
  • Canonical: A0A009QSN8 (Residues: 1-109; Coverage: 100%)
Gene names: J536_1647, rplV
Sequence domains: Ribosomal protein L22p/L17e
Large ribosomal subunit protein uL23 Chain: S
Molecule details ›
Chain: S
Length: 106 amino acids
Theoretical weight: 11.61 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA37 (Residues: 1-106; Coverage: 100%)
Gene names: AB57_3528, rplW
Sequence domains: Ribosomal protein L23
Large ribosomal subunit protein uL24 Chain: T
Molecule details ›
Chain: T
Length: 105 amino acids
Theoretical weight: 11.19 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA28 (Residues: 1-105; Coverage: 100%)
Gene names: AB57_3519, rplX
Sequence domains:
Large ribosomal subunit protein bL25 Chain: U
Molecule details ›
Chain: U
Length: 98 amino acids
Theoretical weight: 10.94 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7I7B6 (Residues: 1-98; Coverage: 100%)
Gene names: AB57_0881, rplY
Sequence domains: Ribosomal L25p family
Large ribosomal subunit protein bL27 Chain: V
Molecule details ›
Chain: V
Length: 85 amino acids
Theoretical weight: 9.07 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7I6V8 (Residues: 1-85; Coverage: 100%)
Gene names: AB57_3150, rpmA
Sequence domains: Ribosomal L27 protein
Large ribosomal subunit protein bL28 Chain: W
Molecule details ›
Chain: W
Length: 78 amino acids
Theoretical weight: 9.13 KDa
Source organism: Acinetobacter rudis CIP 110305
UniProt:
  • Canonical: S3NQR5 (Residues: 1-78; Coverage: 100%)
Gene names: F945_00480, rpmB
Sequence domains: Ribosomal L28 family
Large ribosomal subunit protein uL29 Chain: X
Molecule details ›
Chain: X
Length: 65 amino acids
Theoretical weight: 7.45 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7IA31 (Residues: 1-65; Coverage: 100%)
Gene names: AB57_3522, rpmC
Sequence domains: Ribosomal L29 protein
Large ribosomal subunit protein uL30 Chain: Y
Molecule details ›
Chain: Y
Length: 58 amino acids
Theoretical weight: 6.65 KDa
Source organism: Acinetobacter sp. CIP 102082
UniProt:
  • Canonical: N8V730 (Residues: 1-58; Coverage: 100%)
Gene names: F970_01629, rpmD
Sequence domains: Ribosomal protein L30p/L7e
Large ribosomal subunit protein bL32 Chain: Z
Molecule details ›
Chain: Z
Length: 61 amino acids
Theoretical weight: 7.1 KDa
Source organism: Acinetobacter baumannii AB0057
UniProt:
  • Canonical: B7I7A4 (Residues: 1-61; Coverage: 100%)
Gene names: AB57_0869, rpmF
Sequence domains: Ribosomal L32p protein family
23S ribosomal RNA Chain: AN1
Molecule details ›
Chain: AN1
Length: 2918 nucleotides
Theoretical weight: 945.3 KDa
Sequence domains: Bacterial large subunit ribosomal RNA
5S ribosomal RNA Chain: B
Molecule details ›
Chain: B
Length: 115 nucleotides
Theoretical weight: 37 KDa
Sequence domains: 5S ribosomal RNA

Ligands and Environments

3 bound ligands:
Ligand ZN 1 x ZN
Ligand MG 106 x MG
Ligand NA 1 x NA
9 modified residues:
Ligand PSU 7 x PSU
Ligand 3TD 1 x 3TD
Ligand 5MU 1 x 5MU
Ligand 6MZ 1 x 6MZ
Ligand 7MG 1 x 7MG
Ligand OMG 1 x OMG
Ligand 2MG 1 x 2MG
Ligand 2MA 1 x 2MA
Ligand OMU 1 x OMU

Experiments and Validation Details

Entry percentile scores
Resolution: 2.95Å
Relevant EMDB volumes: EMD-21033

Quick links

Citations

7 review citations

Structural Heterogeneities of the Ribosome: New Frontiers and Opportunities for Cryo-EM.
Poitevin et al. (2020)
6 more

1 mention without citation

Cryo-electron Microscopy Structure of the Acinetobacter baumannii 70S Ribosome and Implications for New Antibiotic Development.
Morgan et al. (2020)