› 6vje

X-ray diffraction
1.76Å resolution

Crystal structure of Pseudomonas aeruginosa penicillin-binding protein 3 (PBP3) complexed with ceftobiprole

Released:
DOI: 10.2210/pdb6vje/pdb
PDB entry 6vje coloured by chain, front view.
PDB entry 6vje coloured by chain, side view.
PDB entry 6vje coloured by chain, top view.
Source organism: Pseudomonas aeruginosa
Primary publication:
Structural Insights into Ceftobiprole Inhibition of Pseudomonas aeruginosa Penicillin-Binding Protein 3.
Kumar V, Tang C, Bethel CR, Papp-Wallace KM, Wyatt J, Desarbre E, Bonomo RA, van den Akker F
Antimicrob Agents Chemother 64 (2020)
PMID: 32152075

Function and Biology Details

Reaction catalysed: 
Preferential cleavage: (Ac)(2)-L-Lys-D-Ala-|-D-Ala. Also transpeptidation of peptidyl-alanyl moieties that are N-acyl substituents of D-alanine.
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-124404 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peptidoglycan D,D-transpeptidase FtsI Chain: A
Molecule details ›
Chain: A
Length: 538 amino acids
Theoretical weight: 58.33 KDa
Source organism: Pseudomonas aeruginosa
Expression system: Escherichia coli
UniProt:
  • Canonical: G3XD46 (Residues: 50-579; Coverage: 92%)
Gene names: PA4418, ftsI, pbpB
Sequence domains:

Ligands and Environments

2 bound ligands:
Ligand RB6 1 x RB6
Ligand CL 2 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL14-1
Spacegroup: P212121
Unit cell:
a: 68.195Å b: 83.739Å c: 89.918Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.207 0.205 0.252
Expression system: Escherichia coli

Quick links

Citations

1 review citation

Advances in Understanding of the Copper Homeostasis in Pseudomonas aeruginosa.
Hofmann et al. (2021)
3 other articles

1 mention without citation

Structural Insights into Ceftobiprole Inhibition of Pseudomonas aeruginosa Penicillin-Binding Protein 3.
Kumar et al. (2020)