6w6p

Electron Microscopy
2.9Å resolution

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 47-mer (preferred)
PDBe Complex ID:
PDB-CPX-103286 (preferred)
Entry contents:
44 distinct polypeptide molecules
3 distinct RNA molecules
Macromolecules (47 distinct):
Small ribosomal subunit protein uS3 Chain: c
Molecule details ›
Chain: c
Length: 204 amino acids
Theoretical weight: 22.88 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKR8 (Residues: 2-205; Coverage: 94%)
Gene names: DAI13_00820, DVW78_13195, EGW70_04385, EU507_10365, EY666_01565, F1M88_01310, H9Q64_09035, P7G68_09000, rpsC
Sequence domains:
Small ribosomal subunit protein uS4 Chain: d
Molecule details ›
Chain: d
Length: 201 amino acids
Theoretical weight: 23.03 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XRV7 (Residues: 2-202; Coverage: 99%)
Gene names: DAI13_15225, DVW78_04605, EGW70_06610, EU507_06310, EY666_04855, F1M88_13460, H9Q64_14110, P7G68_06205, rpsD
Sequence domains:
Small ribosomal subunit protein uS5 Chain: e
Molecule details ›
Chain: e
Length: 163 amino acids
Theoretical weight: 17.16 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKW0 (Residues: 3-165; Coverage: 98%)
Gene names: DAI13_00875, DVW78_13140, EGW70_04440, EU507_10420, EY666_01510, F1M88_01365, H9Q64_08980, P7G68_08945, rpsE
Sequence domains:
Small ribosomal subunit protein bS6 Chain: f
Molecule details ›
Chain: f
Length: 97 amino acids
Theoretical weight: 11.33 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKB6 (Residues: 3-99; Coverage: 97%)
Gene names: DAI13_00035, DVW78_06410, EGW70_06370, EU507_09610, EY666_06705, F1M88_00310, H9Q64_15315, P7G68_10055, rpsF
Sequence domains: Ribosomal protein S6
Small ribosomal subunit protein uS7 Chain: g
Molecule details ›
Chain: g
Length: 154 amino acids
Theoretical weight: 17.55 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKQ3 (Residues: 2-155; Coverage: 99%)
Gene names: DAI13_00760, DVW78_13255, EGW70_04325, EU507_10305, EY666_01625, F1M88_01250, H9Q64_09095, P7G68_09060, rpsG
Sequence domains: Ribosomal protein S7p/S5e
Small ribosomal subunit protein uS8 Chain: h
Molecule details ›
Chain: h
Length: 131 amino acids
Theoretical weight: 14.81 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKS6 (Residues: 2-132; Coverage: 99%)
Gene names: DAI13_00860, DVW78_13155, EGW70_04425, EU507_10405, EY666_01525, F1M88_01350, H9Q64_08995, P7G68_08960, rpsH
Sequence domains: Ribosomal protein S8
Small ribosomal subunit protein uS9 Chain: i
Molecule details ›
Chain: i
Length: 128 amino acids
Theoretical weight: 14.07 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XSA2 (Residues: 3-130; Coverage: 99%)
Gene names: DAI13_15990, DVW78_14745, EGW70_09430, EU507_05285, F1M88_14140, H9Q64_14800, P7G68_05535, rpsI
Sequence domains: Ribosomal protein S9/S16
Small ribosomal subunit protein uS10 Chain: j
Molecule details ›
Chain: j
Length: 99 amino acids
Theoretical weight: 11.4 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKR5 (Residues: 4-102; Coverage: 97%)
Gene names: DAI13_00785, DVW78_13230, EGW70_04350, EU507_10330, EY666_01600, F1M88_01275, H9Q64_09070, P7G68_09035, rpsJ
Sequence domains: Ribosomal protein S10p/S20e
Small ribosomal subunit protein uS11 Chain: k
Molecule details ›
Chain: k
Length: 117 amino acids
Theoretical weight: 12.32 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKV1 (Residues: 13-129; Coverage: 91%)
Gene names: DAI13_00915, DVW78_13100, EGW70_04480, EU507_10460, EY666_01470, F1M88_01405, H9Q64_08940, P7G68_08905, rpsK
Sequence domains: Ribosomal protein S11
Small ribosomal subunit protein uS12 Chain: l
Molecule details ›
Chain: l
Length: 136 amino acids
Theoretical weight: 15.18 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKQ7 (Residues: 2-137; Coverage: 99%)
Gene names: DAI13_00755, DVW78_13260, EGW70_04320, EU507_10300, EY666_01630, F1M88_01245, H9Q64_09100, P7G68_09065, rpsL
Sequence domains: Ribosomal protein S12/S23
Small ribosomal subunit protein uS13 Chain: m
Molecule details ›
Chain: m
Length: 112 amino acids
Theoretical weight: 12.62 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKT7 (Residues: 2-113; Coverage: 93%)
Gene names: DAI13_00910, DVW78_13105, EGW70_04475, EU507_10455, EY666_01475, F1M88_01400, H9Q64_08945, P7G68_08910, rpsM
Sequence domains: Ribosomal protein S13/S18
Small ribosomal subunit protein uS14 Chain: n
Molecule details ›
Chain: n
Length: 60 amino acids
Theoretical weight: 7.04 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKT0 (Residues: 2-61; Coverage: 98%)
Gene names: DAI13_00855, DVW78_13160, EGW70_04420, EU507_10400, EY666_01530, F1M88_01345, H9Q64_09000, P7G68_08965, rpsN, rpsZ
Sequence domains: Ribosomal protein S14p/S29e
Small ribosomal subunit protein uS15 Chain: o
Molecule details ›
Chain: o
Length: 88 amino acids
Theoretical weight: 10.54 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XRW3 (Residues: 2-89; Coverage: 99%)
Gene names: DAI13_15200, DVW78_04630, EGW70_06635, EU507_06335, EY666_09120, F1M88_13435, H9Q64_14085, P7G68_06230, rpsO
Sequence domains: Ribosomal protein S15
Small ribosomal subunit protein bS16 Chain: p
Molecule details ›
Chain: p
Length: 89 amino acids
Theoretical weight: 10.1 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XP69 (Residues: 2-90; Coverage: 98%)
Gene names: DAI13_08520, DVW78_00915, EU507_02810, EY666_03950, F1M88_07920, H9Q64_02505, P7G68_02290, rpsP
Sequence domains: Ribosomal protein S16
Small ribosomal subunit protein uS17 Chain: q
Molecule details ›
Chain: q
Length: 83 amino acids
Theoretical weight: 9.74 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKS3 (Residues: 4-86; Coverage: 94%)
Gene names: DAI13_00835, DVW78_13180, EGW70_04400, EU507_10380, EY666_01550, F1M88_01325, H9Q64_09020, P7G68_08985, rpsQ
Sequence domains: Ribosomal protein S17
Small ribosomal subunit protein bS18 Chain: r
Molecule details ›
Chain: r
Length: 66 amino acids
Theoretical weight: 7.65 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKB3 (Residues: 13-78; Coverage: 84%)
Gene names: DAI13_00045, DVW78_06420, EGW70_06380, EU507_09620, EY666_06715, F1M88_00320, H9Q64_15325, P7G68_10045, rpsR
Sequence domains: Ribosomal protein S18
30S ribosomal protein S19 Chain: s
Molecule details ›
Chain: s
Length: 78 amino acids
Theoretical weight: 9 KDa
Source organism: Enterococcus faecalis OG1RF
Small ribosomal subunit protein bS20 Chain: t
Molecule details ›
Chain: t
Length: 82 amino acids
Theoretical weight: 8.84 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XQJ7 (Residues: 2-83; Coverage: 99%)
Gene names: DAI13_12000, DVW78_07205, EGW70_05600, EU507_04835, EY666_01035, F1M88_10680, H9Q64_10805, P7G68_00180, rpsT
Sequence domains: Ribosomal protein S20
Large ribosomal subunit protein uL2 Chain: C
Molecule details ›
Chain: C
Length: 275 amino acids
Theoretical weight: 30.16 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKR6 (Residues: 2-276; Coverage: 100%)
Gene names: DAI13_00805, DVW78_13210, EGW70_04370, EU507_10350, EY666_01580, H9Q64_09050, P7G68_09015, rplB
Sequence domains:
Large ribosomal subunit protein uL3 Chain: D
Molecule details ›
Chain: D
Length: 207 amino acids
Theoretical weight: 22.5 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKR3 (Residues: 2-208; Coverage: 99%)
Gene names: DAI13_00790, DVW78_13225, EGW70_04355, EU507_10335, EY666_01595, F1M88_01280, H9Q64_09065, P7G68_09030, rplC
Sequence domains: Ribosomal protein L3
Large ribosomal subunit protein uL4 Chain: E
Molecule details ›
Chain: E
Length: 206 amino acids
Theoretical weight: 22.38 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKU7 (Residues: 2-207; Coverage: 100%)
Gene names: DAI13_00795, EGW70_04360, EU507_10340, EY666_01590, F1M88_01285, H9Q64_09060, P7G68_09025, rplD
Sequence domains: Ribosomal protein L4/L1 family
Large ribosomal subunit protein uL5 Chain: F
Molecule details ›
Chain: F
Length: 177 amino acids
Theoretical weight: 19.86 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKS2 (Residues: 2-178; Coverage: 99%)
Gene names: DAI13_00850, DVW78_13165, EGW70_04415, EU507_10395, EY666_01535, F1M88_01340, H9Q64_09005, P7G68_08970, rplE
Sequence domains:
Large ribosomal subunit protein uL6 Chain: G
Molecule details ›
Chain: G
Length: 176 amino acids
Theoretical weight: 19.16 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKU3 (Residues: 2-177; Coverage: 99%)
Gene names: EGW70_04430, EU507_10410, EY666_01520, F1M88_01355, H9Q64_08990, P7G68_08955, rplF
Sequence domains: Ribosomal protein L6
Large ribosomal subunit protein uL13 Chain: K
Molecule details ›
Chain: K
Length: 145 amino acids
Theoretical weight: 16.1 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XSB2 (Residues: 1-145; Coverage: 99%)
Gene names: DAI13_15995, DVW78_14740, EGW70_09435, EU507_05280, EY666_14930, F1M88_14145, H9Q64_14805, P7G68_05530, rplM
Sequence domains: Ribosomal protein L13
Large ribosomal subunit protein uL14 Chain: L
Molecule details ›
Chain: L
Length: 122 amino acids
Theoretical weight: 13.17 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKS1 (Residues: 1-122; Coverage: 100%)
Gene names: DAI13_00840, DVW78_13175, EGW70_04405, EU507_10385, EY666_01545, F1M88_01330, H9Q64_09015, P7G68_08980, rplN
Sequence domains: Ribosomal protein L14p/L23e
Large ribosomal subunit protein uL15 Chain: M
Molecule details ›
Chain: M
Length: 146 amino acids
Theoretical weight: 15.6 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKT1 (Residues: 1-146; Coverage: 100%)
Gene names: DAI13_00885, DVW78_13130, EGW70_04450, EU507_10430, F1M88_01375, H9Q64_08970, P7G68_08935, rplO
Sequence domains: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Large ribosomal subunit protein uL16 Chain: N
Molecule details ›
Chain: N
Length: 141 amino acids
Theoretical weight: 15.96 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKU1 (Residues: 1-141; Coverage: 98%)
Gene names: DAI13_00825, DVW78_13190, EGW70_04390, EU507_10370, EY666_01560, F1M88_01315, H9Q64_09030, P7G68_08995, rplP
Sequence domains: Ribosomal protein L16p/L10e
Large ribosomal subunit protein bL17 Chain: O
Molecule details ›
Chain: O
Length: 124 amino acids
Theoretical weight: 14.16 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKX1 (Residues: 3-126; Coverage: 98%)
Gene names: DAI13_00925, DVW78_13090, EGW70_04490, EU507_10470, EY666_01460, F1M88_01415, H9Q64_08930, P7G68_08895, rplQ
Sequence domains: Ribosomal protein L17
Large ribosomal subunit protein uL18 Chain: P
Molecule details ›
Chain: P
Length: 117 amino acids
Theoretical weight: 12.81 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKS7 (Residues: 2-118; Coverage: 99%)
Gene names: DAI13_00870, DVW78_13145, EGW70_04435, EU507_10415, EY666_01515, F1M88_01360, H9Q64_08985, P7G68_08950, rplR
Sequence domains: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Large ribosomal subunit protein bL19 Chain: Q
Molecule details ›
Chain: Q
Length: 114 amino acids
Theoretical weight: 13.11 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XPL8 (Residues: 2-115; Coverage: 99%)
Gene names: DAI13_09530, DVW78_12390, EGW70_10030, EU507_02955, EY666_12750, F1M88_08770, H9Q64_01535, P7G68_01670, rplS
Sequence domains: Ribosomal protein L19
Large ribosomal subunit protein bL20 Chain: R
Molecule details ›
Chain: R
Length: 118 amino acids
Theoretical weight: 13.54 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XM76 (Residues: 2-119; Coverage: 99%)
Gene names: DAI13_04535, DVW78_05760, EU507_12015, EY666_03490, F1M88_03885, H9Q64_06015, P7G68_07970, rplT
Sequence domains: Ribosomal protein L20
Large ribosomal subunit protein bL21 Chain: S
Molecule details ›
Chain: S
Length: 102 amino acids
Theoretical weight: 11.17 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XMC1 (Residues: 1-102; Coverage: 100%)
Gene names: DAI13_04805, DVW78_05490, EU507_12375, EY666_08665, F1M88_04190, H9Q64_05735, P7G68_07685, rplU
Sequence domains: Ribosomal prokaryotic L21 protein
Large ribosomal subunit protein uL22 Chain: T
Molecule details ›
Chain: T
Length: 112 amino acids
Theoretical weight: 12.13 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKT6 (Residues: 4-115; Coverage: 97%)
Gene names: DAI13_00815, DVW78_13200, EGW70_04380, EU507_10360, EY666_01570, F1M88_01305, H9Q64_09040, P7G68_09005, rplV
Sequence domains: Ribosomal protein L22p/L17e
Large ribosomal subunit protein uL23 Chain: U
Molecule details ›
Chain: U
Length: 89 amino acids
Theoretical weight: 10.3 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKR7 (Residues: 2-90; Coverage: 93%)
Gene names: DAI13_00800, DVW78_13215, EGW70_04365, EU507_10345, EY666_01585, F1M88_01290, H9Q64_09055, P7G68_09020, rplW
Sequence domains: Ribosomal protein L23
Large ribosomal subunit protein uL24 Chain: V
Molecule details ›
Chain: V
Length: 101 amino acids
Theoretical weight: 10.89 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKV5 (Residues: 1-101; Coverage: 98%)
Gene names: DAI13_00845, DVW78_13170, EGW70_04410, EU507_10390, EY666_01540, F1M88_01335, H9Q64_09010, P7G68_08975, rplX
Sequence domains:
Large ribosomal subunit protein bL27 Chain: X
Molecule details ›
Chain: X
Length: 76 amino acids
Theoretical weight: 8.15 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XMB1 (Residues: 18-93; Coverage: 80%)
Gene names: DAI13_04815, DVW78_05480, EU507_12385, F1M88_04200, H9Q64_05725, P7G68_07675, rpmA
Sequence domains: Ribosomal L27 protein
Large ribosomal subunit protein bL28 Chain: Y
Molecule details ›
Chain: Y
Length: 54 amino acids
Theoretical weight: 6.07 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XRZ8 (Residues: 2-55; Coverage: 87%)
Gene names: DAI13_15450, DVW78_04375, EGW70_12080, EU507_06120, EY666_07140, F1M88_13645, H9Q64_14315, P7G68_06005, rpmB
Sequence domains: Ribosomal L28 family
Large ribosomal subunit protein uL29 Chain: Z
Molecule details ›
Chain: Z
Length: 61 amino acids
Theoretical weight: 7.21 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKV0 (Residues: 2-62; Coverage: 98%)
Gene names: DAI13_00830, DVW78_13185, EGW70_04395, EU507_10375, EY666_01555, F1M88_01320, H9Q64_09025, P7G68_08990, rpmC
Sequence domains: Ribosomal L29 protein
Large ribosomal subunit protein uL30 Chain: 0
Molecule details ›
Chain: 0
Length: 58 amino acids
Theoretical weight: 6.23 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKW1 (Residues: 2-59; Coverage: 98%)
Gene names: DAI13_00880, DVW78_13135, EGW70_04445, EU507_10425, EY666_01505, F1M88_01370, H9Q64_08975, P7G68_08940, rpmD
Sequence domains: Ribosomal protein L30p/L7e
Large ribosomal subunit protein bL32 Chain: 2
Molecule details ›
Chain: 2
Length: 56 amino acids
Theoretical weight: 6.22 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XMM2 (Residues: 2-57; Coverage: 95%)
Gene names: DAI13_05210, DVW78_05080, EGW70_05460, EU507_14440, EY666_01915, F1M88_04590, H9Q64_05345, P7G68_07010, rpmF
Sequence domains: Ribosomal L32p protein family
Large ribosomal subunit protein bL33 Chain: 3
Molecule details ›
Chain: 3
Length: 49 amino acids
Theoretical weight: 6.05 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XR98 (Residues: 1-49; Coverage: 100%)
Gene names: DAI13_13835, DVW78_15305, EGW70_08635, EU507_14715, EY666_13170, F1M88_12210, H9Q64_12835, P7G68_13085, rpmG
Sequence domains: Ribosomal protein L33
Large ribosomal subunit protein bL34 Chain: 4
Molecule details ›
Chain: 4
Length: 44 amino acids
Theoretical weight: 5.37 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XSI4 (Residues: 1-44; Coverage: 100%)
Gene names: DAI13_16570, DVW78_06375, EGW70_06335, EU507_09575, EY666_06670, F1M88_00275, H9Q64_15280, P7G68_10090, rpmH
Sequence domains: Ribosomal protein L34
Large ribosomal subunit protein bL35 Chain: 5
Molecule details ›
Chain: 5
Length: 64 amino acids
Theoretical weight: 7.47 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XM73 (Residues: 2-65; Coverage: 97%)
Gene names: DAI13_04530, DVW78_05765, EU507_12010, EY666_03485, F1M88_03880, H9Q64_06020, P7G68_07975, rpmI
Sequence domains: Ribosomal protein L35
Large ribosomal subunit protein bL36 Chain: 6
Molecule details ›
Chain: 6
Length: 38 amino acids
Theoretical weight: 4.44 KDa
Source organism: Enterococcus faecalis OG1RF
UniProt:
  • Canonical: A0A1B4XKT9 (Residues: 1-38; Coverage: 100%)
Gene names: DAI13_00905, DVW78_13110, EGW70_04470, EU507_10450, EY666_01480, F1M88_01395, H9Q64_08950, P7G68_08915, rpmJ
Sequence domains: Ribosomal protein L36
16S ribosomal RNA Chain: a
Molecule details ›
Chain: a
Length: 1548 nucleotides
Theoretical weight: 501.09 KDa
Sequence domains: Bacterial small subunit ribosomal RNA
23S ribosomal RNA Chain: A
Molecule details ›
Chain: A
Length: 2908 nucleotides
Theoretical weight: 942.68 KDa
Sequence domains: Bacterial large subunit ribosomal RNA
5S ribosomal RNA Chain: B
Molecule details ›
Chain: B
Length: 116 nucleotides
Theoretical weight: 37.43 KDa
Sequence domains: 5S ribosomal RNA

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.9Å
Relevant EMDB volumes: EMD-21562