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› 6whj

X-ray diffraction
2.65Å resolution

Structure of Ribokinase from Giardia lamblia

Released:
DOI: 10.2210/pdb6whj/pdb
Model geometry
Fit model/data
PDB entry 6whj coloured by chain, front view.
PDB entry 6whj coloured by chain, side view.
PDB entry 6whj coloured by chain, top view.
Source organism: Giardia lamblia ATCC 50803
Entry author: Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Function and Biology Details

Reaction catalysed: 
D-ribose + ATP = D-ribose 5-phosphate + ADP + H(+).
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108577 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ribokinase Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 351 amino acids
Theoretical weight: 37.55 KDa
Source organism: Giardia lamblia ATCC 50803
Expression system: Escherichia coli 'BL21-Gold(DE3)pLysS AG'
UniProt:
  • Canonical: A8B6Y7 (Residues: 1-344; Coverage: 100%)
Gene name: GL50803_0015297
Sequence domains: pfkB family carbohydrate kinase

Ligands and Environments

1 bound ligand:
Ligand EDO 3 x EDO
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: RIGAKU FR-E+ SUPERBRIGHT
Spacegroup: P21
Unit cell:
a: 44.62Å b: 169.92Å c: 84.14Å
α: 90° β: 98.36° γ: 90°
R-values:
R R work R free
0.181 0.179 0.224
Expression system: Escherichia coli 'BL21-Gold(DE3)pLysS AG'

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