› 6woo

Electron Microscopy
2.9Å resolution

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Released:
DOI: 10.2210/pdb6woo/pdb
PDB entry 6woo coloured by chain, front view.
PDB entry 6woo coloured by chain, side view.
PDB entry 6woo coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Entry authors: Wang J, Wang J, Puglisi J, Fernandez IS
Related structures: EMD-21859

Function and Biology Details

Reaction catalysed: 
GTP + H(2)O = GDP + phosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 84-mer (preferred)
PDBe Complex ID:
PDB-CPX-103564 (preferred)
Entry contents:
78 distinct polypeptide molecules
6 distinct RNA molecules
Macromolecules (84 distinct):
Large ribosomal subunit protein uL2A Chain: A
Molecule details ›
Chain: A
Length: 249 amino acids
Theoretical weight: 26.86 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX45 (Residues: 2-250; Coverage: 98%)
Gene names: RPL2A, RPL5B, YFR031BC, YFR031C-A
Sequence domains:
Large ribosomal subunit protein uL3 Chain: B
Molecule details ›
Chain: B
Length: 384 amino acids
Theoretical weight: 43.49 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P14126 (Residues: 2-385; Coverage: 99%)
Gene names: MAK8, RPL3, TCM1, YOR063W, YOR29-14
Sequence domains: Ribosomal protein L3
Large ribosomal subunit protein uL4A Chain: C
Molecule details ›
Chain: C
Length: 359 amino acids
Theoretical weight: 38.83 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P10664 (Residues: 3-361; Coverage: 99%)
Gene names: RPL2, RPL2A, RPL4A, YBR0315, YBR031W
Sequence domains:
Large ribosomal subunit protein uL18 Chain: D
Molecule details ›
Chain: D
Length: 295 amino acids
Theoretical weight: 33.56 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P26321 (Residues: 3-297; Coverage: 99%)
Gene names: LPI14W, RPL1, RPL1A, RPL5, YPL131W
Sequence domains:
Large ribosomal subunit protein eL6A Chain: E
Molecule details ›
Chain: E
Length: 175 amino acids
Theoretical weight: 19.87 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q02326 (Residues: 2-176; Coverage: 99%)
Gene names: RPL17A, RPL6A, YL16A, YML073C
Sequence domains: Ribosomal protein L6e
Large ribosomal subunit protein uL30A Chain: F
Molecule details ›
Chain: F
Length: 222 amino acids
Theoretical weight: 25.24 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05737 (Residues: 23-244; Coverage: 91%)
Gene names: RPL6A, RPL7A, RPL8A, YGL076C, YL8A
Sequence domains:
Large ribosomal subunit protein eL8A Chain: G
Molecule details ›
Chain: G
Length: 233 amino acids
Theoretical weight: 25.81 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P17076 (Residues: 24-256; Coverage: 91%)
Gene names: MAK7, RPL4A, RPL8A, YHL033C
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Large ribosomal subunit protein uL6B Chain: H
Molecule details ›
Chain: H
Length: 191 amino acids
Theoretical weight: 21.69 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P51401 (Residues: 1-190; Coverage: 100%)
Gene names: N2406, RPL8B, RPL9B, YNL067W, YNL2406W
Sequence domains: Ribosomal protein L6
Large ribosomal subunit protein uL16 Chain: I
Molecule details ›
Chain: I
Length: 216 amino acids
Theoretical weight: 24.94 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P41805 (Residues: 3-218; Coverage: 98%)
Gene names: GRC5, QSR1, RPL10, YLR075W
Sequence domains: Ribosomal protein L16p/L10e
Large ribosomal subunit protein uL5B Chain: J
Molecule details ›
Chain: J
Length: 168 amino acids
Theoretical weight: 19.14 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q3E757 (Residues: 6-173; Coverage: 97%)
Gene names: RP39B, RPL11B, RPL16B, YGR085C
Sequence domains:
Large ribosomal subunit protein eL13A Chain: L
Molecule details ›
Chain: L
Length: 198 amino acids
Theoretical weight: 22.47 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q12690 (Residues: 2-199; Coverage: 100%)
Gene names: RPL13A, YDL082W
Sequence domains: Ribosomal protein L13e
Large ribosomal subunit protein eL14A Chain: M
Molecule details ›
Chain: M
Length: 136 amino acids
Theoretical weight: 14.99 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P36105 (Residues: 2-137; Coverage: 99%)
Gene names: RPL14A, YKL006W, YKL153
Sequence domains:
Large ribosomal subunit protein eL15A Chain: N
Molecule details ›
Chain: N
Length: 202 amino acids
Theoretical weight: 24.22 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05748 (Residues: 2-203; Coverage: 99%)
Gene names: RPL10A, RPL13A, RPL15A, YL10A, YLR029C
Sequence domains: Ribosomal L15
Large ribosomal subunit protein uL13A Chain: O
Molecule details ›
Chain: O
Length: 197 amino acids
Theoretical weight: 22.03 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P26784 (Residues: 3-199; Coverage: 99%)
Gene names: RPL13, RPL16A, RPL21A, YIL133C
Sequence domains: Ribosomal protein L13
Large ribosomal subunit protein uL22A Chain: P
Molecule details ›
Chain: P
Length: 180 amino acids
Theoretical weight: 20.25 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05740 (Residues: 3-182; Coverage: 98%)
Gene names: RPL17, RPL17A, RPL20A, YKL180W
Sequence domains: Ribosomal protein L22p/L17e
Large ribosomal subunit protein eL18A Chain: Q
Molecule details ›
Chain: Q
Length: 184 amino acids
Theoretical weight: 20.42 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX49 (Residues: 3-186; Coverage: 99%)
Gene names: RP28A, RPL18A, YOL120C
Sequence domains: Ribosomal protein 60S L18 and 50S L18e
Large ribosomal subunit protein eL19A Chain: R
Molecule details ›
Chain: R
Length: 188 amino acids
Theoretical weight: 21.63 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX82 (Residues: 2-189; Coverage: 100%)
Gene names: RPL19A, RPL23A, YBR084BC, YBR084C-A, YL14A
Sequence domains: Ribosomal protein L19e
Large ribosomal subunit protein eL20A Chain: S
Molecule details ›
Chain: S
Length: 169 amino acids
Theoretical weight: 20.14 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX23 (Residues: 4-172; Coverage: 98%)
Gene names: RPL18A, RPL18A2, RPL20A, YM9408.04C, YMR242C
Sequence domains: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Large ribosomal subunit protein eL21A Chain: T
Molecule details ›
Chain: T
Length: 158 amino acids
Theoretical weight: 18.03 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q02753 (Residues: 2-159; Coverage: 99%)
Gene names: RPL21A, URP1, YBR1401, YBR191W
Sequence domains: Ribosomal protein L21e
Large ribosomal subunit protein eL22A Chain: U
Molecule details ›
Chain: U
Length: 100 amino acids
Theoretical weight: 11.26 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05749 (Residues: 9-108; Coverage: 83%)
Gene names: L2168, RPL22A, YLR061W
Sequence domains: Ribosomal L22e protein family
Large ribosomal subunit protein uL14A Chain: V
Molecule details ›
Chain: V
Length: 132 amino acids
Theoretical weight: 14.01 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX41 (Residues: 5-136; Coverage: 96%)
Gene names: RPL17A, RPL17AA, RPL23A, YBL0713, YBL087C
Sequence domains: Ribosomal protein L14p/L23e
Large ribosomal subunit protein eL24A Chain: W
Molecule details ›
Chain: W
Length: 62 amino acids
Theoretical weight: 7.25 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P04449 (Residues: 2-63; Coverage: 40%)
Gene names: RP29, RPL24A, RPL30A, YGL031C
Sequence domains: Ribosomal protein L24e
Large ribosomal subunit protein uL23 Chain: X
Molecule details ›
Chain: X
Length: 121 amino acids
Theoretical weight: 13.77 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P04456 (Residues: 22-142; Coverage: 85%)
Gene names: RPL25, YOL127W
Sequence domains:
Large ribosomal subunit protein uL24A Chain: Y
Molecule details ›
Chain: Y
Length: 125 amino acids
Theoretical weight: 14.06 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05743 (Residues: 3-127; Coverage: 98%)
Gene names: L8300.4, RPL26, RPL26A, RPL33A, YLR344W
Sequence domains:
Large ribosomal subunit protein eL27A Chain: Z
Molecule details ›
Chain: Z
Length: 134 amino acids
Theoretical weight: 15.37 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0C2H6 (Residues: 3-136; Coverage: 99%)
Gene names: RPL27, RPL27A, YHR010W
Sequence domains: Ribosomal L27e protein family
Large ribosomal subunit protein uL15 Chain: a
Molecule details ›
Chain: a
Length: 147 amino acids
Theoretical weight: 16.56 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P02406 (Residues: 2-148; Coverage: 99%)
Gene names: CYH2, RPL28, YGL103W
Sequence domains: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Large ribosomal subunit protein eL29 Chain: b
Molecule details ›
Chain: b
Length: 57 amino acids
Theoretical weight: 6.49 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05747 (Residues: 3-59; Coverage: 97%)
Gene names: RPL29, YFR032BW, YFR032C-A, YL43
Sequence domains: Ribosomal L29e protein family
Large ribosomal subunit protein eL30 Chain: c
Molecule details ›
Chain: c
Length: 97 amino acids
Theoretical weight: 10.56 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P14120 (Residues: 9-105; Coverage: 92%)
Gene names: RPL30, RPL32, YGL030W
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Large ribosomal subunit protein eL31A Chain: d
Molecule details ›
Chain: d
Length: 106 amino acids
Theoretical weight: 12.29 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0C2H8 (Residues: 5-110; Coverage: 94%)
Gene names: D2478, RPL31A, RPL34, RPL34A, YDL075W
Sequence domains: Ribosomal protein L31e
Large ribosomal subunit protein eL32 Chain: e
Molecule details ›
Chain: e
Length: 122 amino acids
Theoretical weight: 14.02 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38061 (Residues: 5-126; Coverage: 94%)
Gene names: RPL32, YBL0838, YBL092W
Sequence domains: Ribosomal protein L32
Large ribosomal subunit protein eL33A Chain: f
Molecule details ›
Chain: f
Length: 105 amino acids
Theoretical weight: 11.93 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05744 (Residues: 2-106; Coverage: 98%)
Gene names: LPI4W, P2625, RPL33A, RPL37A, YPL143W
Sequence domains: Ribosomal protein L35Ae
Large ribosomal subunit protein eL34A Chain: g
Molecule details ›
Chain: g
Length: 121 amino acids
Theoretical weight: 13.67 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P87262 (Residues: 2-121; Coverage: 99%)
Gene names: RPL34A, YER056BC, YER056C-A
Sequence domains: Ribosomal protein L34e
Large ribosomal subunit protein uL29A Chain: h
Molecule details ›
Chain: h
Length: 116 amino acids
Theoretical weight: 13.54 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX84 (Residues: 3-118; Coverage: 97%)
Gene names: D1249, RPL35A, SOS1, YDL191W
Sequence domains: Ribosomal L29 protein
Large ribosomal subunit protein eL36A Chain: i
Molecule details ›
Chain: i
Length: 98 amino acids
Theoretical weight: 10.92 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05745 (Residues: 3-100; Coverage: 98%)
Gene names: RPL36A, RPL39A, YM9646.06, YMR194W
Sequence domains: Ribosomal protein L36e
Large ribosomal subunit protein eL37A Chain: j
Molecule details ›
Chain: j
Length: 85 amino acids
Theoretical weight: 9.63 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P49166 (Residues: 2-83; Coverage: 93%)
Gene names: L9470.6, RPL35A, RPL37A, YLR185W
Sequence domains: Ribosomal protein L37e
Large ribosomal subunit protein eL38 Chain: k
Molecule details ›
Chain: k
Length: 76 amino acids
Theoretical weight: 8.64 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P49167 (Residues: 3-78; Coverage: 97%)
Gene names: L8543.2, RPL38, YLR325C
Sequence domains: Ribosomal L38e protein family
Large ribosomal subunit protein eL39 Chain: l
Molecule details ›
Chain: l
Length: 49 amino acids
Theoretical weight: 6.11 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P04650 (Residues: 2-50; Coverage: 96%)
Gene names: J0360, RPL39, RPL46, SPB2, YJL189W
Sequence domains: Ribosomal L39 protein
Large ribosomal subunit protein eL40A Chain: m
Molecule details ›
Chain: m
Length: 51 amino acids
Theoretical weight: 5.92 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CH08 (Residues: 78-128; Coverage: 40%)
Gene names: RPL40A, UBI1, YIL148W
Sequence domains: Ribosomal L40e family
eL41 Chain: n
Molecule details ›
Chain: n
Length: 23 amino acids
Theoretical weight: 3.14 KDa
Source organism: Saccharomyces cerevisiae
Large ribosomal subunit protein eL42A Chain: o
Molecule details ›
Chain: o
Length: 101 amino acids
Theoretical weight: 11.66 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX27 (Residues: 2-102; Coverage: 95%)
Gene names: N1722, RPL41A, RPL42A, SCL41A, YNL162W
Sequence domains: Ribosomal protein L44
Large ribosomal subunit protein eL43A Chain: p
Molecule details ›
Chain: p
Length: 87 amino acids
Theoretical weight: 9.61 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX25 (Residues: 3-89; Coverage: 95%)
Gene names: RPL43A, YP9499.02, YPR043W
Sequence domains: Ribosomal L37ae protein family
Large ribosomal subunit protein uL1A Chain: q
Molecule details ›
Chain: q
Length: 217 amino acids
Theoretical weight: 24.52 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX43 (Residues: 1-217; Coverage: 100%)
Gene names: RPL1A, SSM1, SSM1A, YPL220W
Sequence domains: Ribosomal protein L1p/L10e family
Large ribosomal subunit protein uL10 Chain: r
Molecule details ›
Chain: r
Length: 195 amino acids
Theoretical weight: 21.47 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05317 (Residues: 6-200; Coverage: 63%)
Gene names: L10E, L8300.8, RPA0, RPL10E, RPLA0, RPP0, YLR340W
Sequence domains:
L10 Chain: K
Molecule details ›
Chain: K
Length: 152 amino acids
Theoretical weight: 12.95 KDa
Source organism: Saccharomyces cerevisiae
Small ribosomal subunit protein uS2B Chain: AA
Molecule details ›
Chain: AA
Length: 206 amino acids
Theoretical weight: 22.85 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P46654 (Residues: 2-207; Coverage: 82%)
Gene names: L2118, NAB1B, NAB4, RPS0B, YLR048W, YST2
Sequence domains: Ribosomal protein S2
Small ribosomal subunit protein eS1B Chain: BB
Molecule details ›
Chain: BB
Length: 214 amino acids
Theoretical weight: 24.41 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P23248 (Residues: 20-233; Coverage: 84%)
Gene names: PLC2, RPS10B, RPS1B, YML063W
Sequence domains: Ribosomal S3Ae family
Small ribosomal subunit protein uS5 Chain: CC
Molecule details ›
Chain: CC
Length: 217 amino acids
Theoretical weight: 23.21 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P25443 (Residues: 34-250; Coverage: 85%)
Gene names: G2893, RPS2, RPS4, SUP38, SUP44, YGL123W
Sequence domains:
Small ribosomal subunit protein uS3 Chain: DD
Molecule details ›
Chain: DD
Length: 223 amino acids
Theoretical weight: 24.7 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05750 (Residues: 3-225; Coverage: 93%)
Gene names: N1653, RPS3, SUF14, YNL178W
Sequence domains:
Small ribosomal subunit protein eS4A Chain: EE
Molecule details ›
Chain: EE
Length: 257 amino acids
Theoretical weight: 29.04 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX35 (Residues: 2-258; Coverage: 99%)
Gene names: J2186, RPS4A, RPS7B, YJR145C
Sequence domains:
Small ribosomal subunit protein uS7 domain-containing protein Chain: FF
Molecule details ›
Chain: FF
Length: 206 amino acids
Theoretical weight: 22.91 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: A0A1L4AA68 (Residues: 20-225; Coverage: 92%)
Gene names: GI527_G0003379, RPS5
Sequence domains: Ribosomal protein S7p/S5e
Small ribosomal subunit protein eS6A Chain: GG
Molecule details ›
Chain: GG
Length: 226 amino acids
Theoretical weight: 25.9 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX37 (Residues: 1-226; Coverage: 96%)
Gene names: LPG18C, RPS101, RPS10B, RPS6A, YPL090C
Sequence domains: Ribosomal protein S6e
Small ribosomal subunit protein eS7A Chain: HH
Molecule details ›
Chain: HH
Length: 184 amino acids
Theoretical weight: 21 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P26786 (Residues: 4-187; Coverage: 97%)
Gene names: RPS30, RPS7A, YOR096W, YOR3177W
Sequence domains: Ribosomal protein S7e
Small ribosomal subunit protein eS8A Chain: II
Molecule details ›
Chain: II
Length: 199 amino acids
Theoretical weight: 22.41 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX39 (Residues: 2-200; Coverage: 100%)
Gene names: RPS14A, RPS8A, YBL06.05, YBL0613, YBL072C
Sequence domains: Ribosomal protein S8e
Small ribosomal subunit protein uS4B Chain: JJ
Molecule details ›
Chain: JJ
Length: 182 amino acids
Theoretical weight: 20.97 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05755 (Residues: 2-183; Coverage: 93%)
Gene names: RPS13B, RPS9B, SUP46, YBR1317, YBR189W
Sequence domains:
Small ribosomal subunit protein eS10A Chain: KK
Molecule details ›
Chain: KK
Length: 96 amino acids
Theoretical weight: 11.59 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q08745 (Residues: 1-96; Coverage: 91%)
Gene names: RPS10A, YOR293W
Sequence domains: Plectin/S10 domain
Small ribosomal subunit protein uS17A Chain: LL
Molecule details ›
Chain: LL
Length: 145 amino acids
Theoretical weight: 16.56 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX47 (Residues: 2-145; Coverage: 92%)
Gene names: RPS11A, RPS18A, YD9813.03, YDR025W
Sequence domains:
Small ribosomal subunit protein eS12 Chain: MM
Molecule details ›
Chain: MM
Length: 124 amino acids
Theoretical weight: 13.33 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P48589 (Residues: 20-143; Coverage: 87%)
Gene names: RPS12, YOR369C
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Small ribosomal subunit protein uS15 Chain: NN
Molecule details ›
Chain: NN
Length: 150 amino acids
Theoretical weight: 16.93 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05756 (Residues: 2-151; Coverage: 99%)
Gene names: D4252, RPS13, RPS13C, YD9609.18, YDR064W
Sequence domains:
Small ribosomal subunit protein uS11B Chain: OO
Molecule details ›
Chain: OO
Length: 127 amino acids
Theoretical weight: 13.45 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P39516 (Residues: 12-138; Coverage: 92%)
Gene names: CRY2, J0354, RPS14B, YJL191W
Sequence domains: Ribosomal protein S11
Small ribosomal subunit protein uS19 Chain: PP
Molecule details ›
Chain: PP
Length: 103 amino acids
Theoretical weight: 11.65 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q01855 (Residues: 25-127; Coverage: 73%)
Gene names: RPS15, RPS21, YOL040C
Sequence domains: Ribosomal protein S19
Small ribosomal subunit protein uS9A Chain: QQ
Molecule details ›
Chain: QQ
Length: 141 amino acids
Theoretical weight: 15.66 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX51 (Residues: 3-143; Coverage: 99%)
Gene names: RP61R, RPS16A, YM9375.12, YMR143W
Sequence domains: Ribosomal protein S9/S16
Small ribosomal subunit protein eS17B Chain: RR
Molecule details ›
Chain: RR
Length: 123 amino acids
Theoretical weight: 14.11 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P14127 (Residues: 2-124; Coverage: 90%)
Gene names: RP51B, RPS17B, YDR447C
Sequence domains: Ribosomal S17
Small ribosomal subunit protein uS13A Chain: SS
Molecule details ›
Chain: SS
Length: 136 amino acids
Theoretical weight: 15.93 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX55 (Residues: 9-144; Coverage: 93%)
Gene names: D9461.35, RPS18A, YDR450W
Sequence domains: Ribosomal protein S13/S18
Small ribosomal subunit protein eS19A Chain: TT
Molecule details ›
Chain: TT
Length: 143 amino acids
Theoretical weight: 15.81 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P07280 (Residues: 2-144; Coverage: 99%)
Gene names: RP55A, RPS16AA, RPS19A, YOL121C
Sequence domains: Ribosomal protein S19e
Small ribosomal subunit protein uS10 Chain: UU
Molecule details ›
Chain: UU
Length: 106 amino acids
Theoretical weight: 12.08 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38701 (Residues: 15-120; Coverage: 88%)
Gene names: RPS20, URP2, YHL015W
Sequence domains: Ribosomal protein S10p/S20e
Small ribosomal subunit protein eS21A Chain: VV
Molecule details ›
Chain: VV
Length: 87 amino acids
Theoretical weight: 9.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0C0V8 (Residues: 1-87; Coverage: 100%)
Gene names: RPS21A, RPS25, RPS25A, RPS26A, YKR057W
Sequence domains: Ribosomal protein S21e
Small ribosomal subunit protein uS8A Chain: WW
Molecule details ›
Chain: WW
Length: 129 amino acids
Theoretical weight: 14.52 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0C0W1 (Residues: 2-130; Coverage: 99%)
Gene names: J0355, RPS22A, RPS24, RPS24A, YJL190C
Sequence domains: Ribosomal protein S8
Small ribosomal subunit protein uS12A Chain: XX
Molecule details ›
Chain: XX
Length: 144 amino acids
Theoretical weight: 15.99 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX29 (Residues: 1-144; Coverage: 99%)
Gene names: G6178, RPS23A, RPS28A, YGR118W
Sequence domains: Ribosomal protein S12/S23
Small ribosomal subunit protein eS24A Chain: YY
Molecule details ›
Chain: YY
Length: 134 amino acids
Theoretical weight: 15.23 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX31 (Residues: 2-135; Coverage: 99%)
Gene names: RPS24A, RPS24EA, YER074W
Sequence domains: Ribosomal protein S24e
Small ribosomal subunit protein eS25A Chain: ZZ
Molecule details ›
Chain: ZZ
Length: 70 amino acids
Theoretical weight: 8 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q3E792 (Residues: 36-105; Coverage: 65%)
Gene names: RPS25A, RPS31A, YGR027C
Sequence domains: S25 ribosomal protein
Small ribosomal subunit protein eS26B Chain: aa
Molecule details ›
Chain: aa
Length: 97 amino acids
Theoretical weight: 11.02 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P39939 (Residues: 2-98; Coverage: 82%)
Gene names: RPS26B, YER131W
Sequence domains: Ribosomal protein S26e
Small ribosomal subunit protein eS27A Chain: bb
Molecule details ›
Chain: bb
Length: 81 amino acids
Theoretical weight: 8.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P35997 (Residues: 2-82; Coverage: 99%)
Gene names: RPS27A, YKL156W
Sequence domains: Ribosomal protein S27
Small ribosomal subunit protein eS28A Chain: cc
Molecule details ›
Chain: cc
Length: 63 amino acids
Theoretical weight: 7.12 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q3E7X9 (Residues: 5-67; Coverage: 94%)
Gene names: O3600, RPS28A, RPS33, RPS33A, YOR167C
Sequence domains: Ribosomal protein S28e
Small ribosomal subunit protein uS14A Chain: dd
Molecule details ›
Chain: dd
Length: 53 amino acids
Theoretical weight: 6.34 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P41057 (Residues: 4-56; Coverage: 95%)
Gene names: L8084.11, RPS29A, RPS36A, YLR388W, YS29A
Sequence domains: Ribosomal protein S14p/S29e
Small ribosomal subunit protein eS30A Chain: ee
Molecule details ›
Chain: ee
Length: 53 amino acids
Theoretical weight: 6.08 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX33 (Residues: 9-61; Coverage: 84%)
Gene names: L8003.23, RPS30A, YLR287BC, YLR287C-A
Sequence domains: Ribosomal protein S30
Small ribosomal subunit protein eS31 Chain: ff
Molecule details ›
Chain: ff
Length: 57 amino acids
Theoretical weight: 6.46 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05759 (Residues: 94-150; Coverage: 38%)
Gene names: L9470.14, RPS31, RPS37, UBI3, YLR167W
Sequence domains: Ribosomal protein S27a
Small ribosomal subunit protein RACK1 Chain: gg
Molecule details ›
Chain: gg
Length: 318 amino acids
Theoretical weight: 34.71 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38011 (Residues: 2-319; Coverage: 100%)
Gene names: ASC1, CPC2, YM9718.15C, YMR116C
Sequence domains: WD domain, G-beta repeat
Eukaryotic translation initiation factor 5B Chain: 1
Molecule details ›
Chain: 1
Length: 600 amino acids
Theoretical weight: 67.07 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: P39730 (Residues: 401-1000; Coverage: 60%)
Gene names: FUN12, YAL035W
Sequence domains:
25S ribosomal RNA Chain: 5
Molecule details ›
Chain: 5
Length: 3271 nucleotides
Theoretical weight: 1057.32 KDa
Sequence domains: Eukaryotic large subunit ribosomal RNA
5S ribosomal RNA Chain: 7
Molecule details ›
Chain: 7
Length: 121 nucleotides
Theoretical weight: 38.95 KDa
Sequence domains: 5S ribosomal RNA
5.8S ribosomal rRNA Chain: 8
Molecule details ›
Chain: 8
Length: 157 nucleotides
Theoretical weight: 50.38 KDa
Sequence domains: 5.8S ribosomal RNA
18S Ribosomal RNA Chain: 2
Molecule details ›
Chain: 2
Length: 1796 nucleotides
Theoretical weight: 578.48 KDa
Sequence domains: Eukaryotic small subunit ribosomal RNA
Met-tRNA-iMet Chain: 3
Molecule details ›
Chain: 3
Length: 76 nucleotides
Theoretical weight: 24.58 KDa
Sequence domains: tRNA
Messenger RNA Chain: 4
Molecule details ›
Chain: 4
Length: 6 nucleotides
Theoretical weight: 1.92 KDa

Ligands and Environments

4 bound ligands:
Ligand ZN 6 x ZN
Ligand GDP 1 x GDP
Ligand U6A 1 x U6A
Ligand MET 1 x MET
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.9Å
Relevant EMDB volumes: EMD-21859
Expression system: Escherichia coli

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