› 6wq0

Electron Microscopy
2.8Å resolution

Cryo-EM of the S. solfataricus rod-shaped virus, SSRV1

Released:
DOI: 10.2210/pdb6wq0/pdb
PDB entry 6wq0 coloured by chain, front view.
PDB entry 6wq0 coloured by chain, side view.
PDB entry 6wq0 coloured by chain, top view.
Source organism: unclassified Rudivirus
Primary publication:
Structures of filamentous viruses infecting hyperthermophilic archaea explain DNA stabilization in extreme environments.
Wang F, Baquero DP, Beltran LC, Su Z, Osinski T, Zheng W, Prangishvili D, Krupovic M, Egelman EH
Proc Natl Acad Sci U S A 117 19643-19652 (2020)
PMID: 32759221
Related structures: EMD-21867

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
hetero 48-mer (preferred)
PDBe Complex ID:
PDB-CPX-120861 (preferred)
Entry contents:
1 distinct polypeptide molecule
2 distinct DNA molecules
Macromolecules (3 distinct):
Structural protein Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w
Length: 134 amino acids
Theoretical weight: 14.21 KDa
Source organism: unclassified Rudivirus
DNA (301-MER) Chain: 7
Molecule details ›
Chain: 7
Length: 301 nucleotides
Theoretical weight: 92.88 KDa
Source organism: unclassified Rudivirus
DNA (301-MER) Chain: 8
Molecule details ›
Chain: 8
Length: 301 nucleotides
Theoretical weight: 92.87 KDa
Source organism: unclassified Rudivirus

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.8Å
Relevant EMDB volumes: EMD-21867

Quick links

Citations

4 review citations

The Baltimore Classification of Viruses 50 Years Later: How Does It Stand in the Light of Virus Evolution?
Koonin et al. (2021)
3 more

1 mention without citation

Structures of filamentous viruses infecting hyperthermophilic archaea explain DNA stabilization in extreme environments.
Wang et al. (2020)