6x08

X-ray diffraction
4.19Å resolution

Nup85-Seh1 from S. cerevisiae bound by VHH-SAN2

Released:
Model geometry
Fit model/data

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-211253 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Nucleoporin SEH1 Chain: A
Molecule details ›
Chain: A
Length: 353 amino acids
Theoretical weight: 39.47 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli
UniProt:
  • Canonical: P53011 (Residues: 1-349; Coverage: 100%)
Gene names: SEH1, YGL100W
Sequence domains: WD domain, G-beta repeat
Nucleoporin NUP85 Chain: B
Molecule details ›
Chain: B
Length: 568 amino acids
Theoretical weight: 64.62 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli
UniProt:
  • Canonical: P46673 (Residues: 1-564; Coverage: 76%)
Gene names: J1624, NUP85, RAT9, YJR042W
Sequence domains: Nup85 Nucleoporin
VHH-SAN2 Chain: K

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: APS BEAMLINE 24-ID-C
Spacegroup: P6422
Unit cell:
a: 233.992Å b: 233.992Å c: 139.424Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.313 0.311 0.346
Expression system: Escherichia coli