› 6ya0

X-ray diffraction
2.86Å resolution

Crystal structure of TSWV glycoprotein N ectodomain (Trypsin treated)

Released:
DOI: 10.2210/pdb6ya0/pdb
PDB entry 6ya0 coloured by chain, front view.
PDB entry 6ya0 coloured by chain, side view.
PDB entry 6ya0 coloured by chain, top view.
Source organism: Orthotospovirus tomatomaculae
Primary publication:
Crystal structure of tomato spotted wilt virus G N reveals a dimer complex formation and evolutionary link to animal-infecting viruses
Bahat Y, Alter J, Dessau M
Proc. Natl. Acad. Sci. U.S.A. 117 26237- (2020)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assemblies composition:
homo dimer
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-153166 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Glycoprotein N Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 288 amino acids
Theoretical weight: 32.18 KDa
Source organism: Orthotospovirus tomatomaculae
Expression system: Trichoplusia ni
UniProt:
  • Canonical: P36291 (Residues: 36-323; Coverage: 26%)
Gene name: GP

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer
3 bound ligands:
Ligand NAG 5 x NAG
Ligand ACT 1 x ACT
Ligand NH4 1 x NH4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID29
Spacegroup: P21
Unit cell:
a: 68.82Å b: 74.85Å c: 81.28Å
α: 90° β: 103.27° γ: 90°
R-values:
R R work R free
0.222 0.218 0.261
Expression system: Trichoplusia ni

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