6ya7

X-ray diffraction
1.67Å resolution

Cdc7-Dbf4 bound to an Mcm2-S40 derived bivalent substrate

Released:

Function and Biology Details

Reactions catalysed:
ATP + a protein = ADP + a phosphoprotein
ATP + H(2)O = ADP + phosphate
Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-126243 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Cell division cycle 7-related protein kinase Chain: A
Molecule details ›
Chain: A
Length: 358 amino acids
Theoretical weight: 40.1 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: O00311 (Residues: 37-466, 534-574; Coverage: 62%)
Gene names: CDC7, CDC7L1
Sequence domains: Protein kinase domain
Protein DBF4 homolog A Chain: B
Molecule details ›
Chain: B
Length: 144 amino acids
Theoretical weight: 16.92 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9UBU7 (Residues: 210-350; Coverage: 21%)
Gene names: ASK, DBF4, DBF4A, ZDBF1
Sequence domains: DBF zinc finger
DNA replication licensing factor MCM2 Chain: C
Molecule details ›
Chain: C
Length: 15 amino acids
Theoretical weight: 1.8 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P49736 (Residues: 33-47; Coverage: 2%)
Gene names: BM28, CCNL1, CDCL1, KIAA0030, MCM2

Ligands and Environments

2 bound ligands:
2 modified residues:

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P41212
Unit cell:
a: 62.28Å b: 62.28Å c: 234.79Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.158 0.156 0.185
Expression systems:
  • Homo sapiens
  • Escherichia coli
  • Not provided