6yxx

Electron Microscopy
3.9Å resolution

State A of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 87-mer (preferred)
PDBe Complex ID:
PDB-CPX-103459 (preferred)
Entry contents:
83 distinct polypeptide molecules
1 distinct RNA molecule
Macromolecules (84 distinct):
39S ribosomal protein L28, mitochondrial Chain: A1
Molecule details ›
Chain: A1
Length: 241 amino acids
Theoretical weight: 28.05 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q586A2 (Residues: 1-241; Coverage: 100%)
Gene names: Tb06.4F7.280, Tb927.6.4040
mt-LAF21 Chain: E1
Molecule details ›
Chain: E1
Length: 482 amino acids
Theoretical weight: 56.57 KDa
Source organism: Trypanosoma brucei brucei
UniProt:
  • Canonical: Q57WG6 (Residues: 1-482; Coverage: 100%)
Gene names: Tb07.28B13.550, Tb927.7.3510
Large ribosomal subunit protein uL29m Chain: A2
Treble clef zinc finger domain-containing protein Chain: E2
Ribosomal protein L30 ferredoxin-like fold domain-containing protein Chain: A3
mt-LAF23 Chain: E3
mt-LAF24 Chain: E4
bL32m Chain: A5
mt-LAF25 Chain: E5
Kinetoplast ribosomal PPR-repeat containing protein 3 Chain: E6
T. brucei spp.-specific protein Chain: A8
Mitochondrial RNA binding protein Chain: BA
GTP-binding protein, putative Chain: EA
UNK Chains: UA, Uf
mL68 Chain: BB
DEAD-box helicase, putative Chain: EB
Pseudouridylate synthase RPUSD4, mitochondrial Chain: EC
mL70 Chain: BD
TRUD domain-containing protein Chain: ED
Large ribosomal subunit protein uL3m Chain: AE
mL71 Chain: BE
tRNA/rRNA methyltransferase SpoU type domain-containing protein Chain: EE
Large ribosomal subunit protein uL4m Chain: AF
Tetratricopeptide repeat Chain: BF
tRNA/rRNA methyltransferase SpoU type domain-containing protein Chain: EF
mt-LAF7 Chain: EG
mL74 Chain: BH
mt-LAF8 Chain: EH
Ribosomal protein L9 domain-containing protein Chain: AI
Mitochondrial RNA binding complex 1 subunit Chain: BI
UNK Chains: UI, Ur
Ribosomal protein S24/S35 mitochondrial conserved domain-containing protein Chain: BJ
Ribosomal protein L11, putative Chain: AK
J domain-containing protein Chain: BK
UNK Chain: UK
T. brucei spp.-specific protein Chain: BL
mt-LAF12 Chain: EL
G domain-containing protein Chain: EM
UNK Chain: UM
50S ribosomal protein L13, putative Chain: AN
mL80 Chain: BN
T. brucei spp.-specific protein Chain: EN
T. brucei spp.-specific protein Chain: BO
T. brucei spp.-specific protein Chains: EO, EP
Large ribosomal subunit protein uL15/eL18 domain-containing protein Chain: AP
Peptidyl-prolyl cis-trans isomerase Chain: BQ
50S ribosomal protein L17, putative Chain: AR
mL84 Chain: BR
Acyl carrier protein Chain: ER
mL85 Chain: BS
Fungal lipase-type domain-containing protein Chain: ES
bL19m Chain: AT
mL86 Chain: BT
mt-LAF19 Chain: ET
bL20m Chain: AU
T. brucei spp.-specific protein Chain: BU
Large ribosomal subunit protein bL21m Chain: AV
mL88 Chain: BV
Ribosomal protein L22p/L17e Chain: AW
mL89 Chain: BW
Large ribosomal subunit protein uL23m Chain: AX
KOW domain-containing protein Chain: AY
Peptidyl-prolyl cis-trans isomerase Chain: BZ
mL93 Chain: Ba
Rhodanese domain-containing protein Chain: Bb
mL95 Chain: Bc
mL41 Chain: Ae
mL42 Chain: Af
mL98 Chain: Bf
Large ribosomal subunit protein mL43 Chain: Ag
mt-LAF27 Chain: E7
SAP domain-containing protein Chain: E8
mt-LAF29 Chain: E9
mL49 Chain: Al
UNK Chain: Ul
UNK Chain: Um
UNK Chain: Un
mL52 Chain: Ao
mL53 Chain: Ap
UNK Chain: Up
UNK Chain: Us
T. brucei spp.-specific protein Chain: At
mL64 Chain: Av
12S ribosomal RNA Chain: AA

Ligands and Environments

No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this EM entry.
Resolution: 3.9Å
Relevant EMDB volumes: EMD-10999