› 6zom

Solution NMR

Oxidized thioredoxin 1 from the anaerobic bacteria Desulfovibrio vulgaris Hildenborough

Released:
DOI: 10.2210/pdb6zom/pdb
PDB entry 6zom coloured by chain, ensemble of 20 models, front view.
PDB entry 6zom coloured by chain, ensemble of 20 models, side view.
PDB entry 6zom coloured by chain, ensemble of 20 models, top view.
Source organism: Desulfovibrio vulgaris
Primary publication:
Glutamate optimizes enzymatic activity under high hydrostatic pressure in Desulfovibrio species: effects on the ubiquitous thioredoxin system.
Gaussier H, Nouailler M, Champaud E, Garcin EB, Sebban-Kreuzer C, Bornet O, Garel M, Tamburini C, Pieulle L, Dolla A, Pradel N
Extremophiles 25 385-392 (2021)
PMID: 34196828

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-180787 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Thioredoxin Chain: A
Molecule details ›
Chain: A
Length: 113 amino acids
Theoretical weight: 12.28 KDa
Source organism: Desulfovibrio vulgaris
Expression system: Escherichia coli
UniProt:
  • Canonical: Q72B01 (Residues: 1-107; Coverage: 100%)
Gene names: DVU_1839, trx
Sequence domains: Thioredoxin

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this NMR entry.
Chemical shift assignment: 95%
Refinement method: simulated annealing
Expression system: Escherichia coli

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Citations

1 review citation

The Mystery of Piezophiles: Understudied Microorganisms from the Deep, Dark Subsurface.
Scheffer et al. (2023)
2 other articles