7c96

X-ray diffraction
2.51Å resolution

Function and Biology Details

Reaction catalysed:
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-105045 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
RxLR effector protein Avh6 Chain: A
Molecule details ›
Chain: A
Length: 56 amino acids
Theoretical weight: 6.74 KDa
Source organism: Phytophthora sojae strain P6497
Expression system: Escherichia coli
UniProt:
  • Canonical: G4ZLE6 (Residues: 71-125; Coverage: 55%)
Gene names: Avh6, Avh6-1, Avr1d
Sequence domains: RXLR phytopathogen effector protein, Avirulence activity
RING-type E3 ubiquitin transferase Chain: B
Molecule details ›
Chain: B
Length: 77 amino acids
Theoretical weight: 8.69 KDa
Source organism: Glycine soja
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A445HLW5 (Residues: 251-327; Coverage: 12%)
Gene name: D0Y65_033542
Sequence domains: U-box domain

Ligands and Environments

No bound ligands
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P6522
Unit cell:
a: 69.547Å b: 69.547Å c: 153.48Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.236 0.235 0.249
Expression system: Escherichia coli