› 7cpu

Electron Microscopy
2.82Å resolution

Cryo-EM structure of 80S ribosome from mouse kidney

Released:
DOI: 10.2210/pdb7cpu/pdb
PDB entry 7cpu coloured by chain, front view.
PDB entry 7cpu coloured by chain, side view.
PDB entry 7cpu coloured by chain, top view.
Source organism: Mus musculus
Primary publication:
A male germ-cell-specific ribosome controls male fertility.
Li H, Huo Y, He X, Yao L, Zhang H, Cui Y, Xiao H, Xie W, Zhang D, Wang Y, Zhang S, Tu H, Cheng Y, Guo Y, Cao X, Zhu Y, Jiang T, Guo X, Qin Y, Sha J
Nature 612 725-731 (2022)
PMID: 36517592
Related structures: EMD-30432

Function and Biology Details

Reaction catalysed: 
The C-O-P bond 3' to the apurinic or apyrimidinic site in DNA is broken by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 78-mer (preferred)
PDBe Complex ID:
PDB-CPX-236913 (preferred)
Entry contents:
73 distinct polypeptide molecules
5 distinct RNA molecules
Macromolecules (78 distinct):
Large ribosomal subunit protein uL2 Chain: LA
Molecule details ›
Chain: LA
Length: 257 amino acids
Theoretical weight: 28.09 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62918 (Residues: 1-257; Coverage: 100%)
Gene name: Rpl8
Sequence domains:
Small ribosomal subunit protein uS2 Chain: SA
Molecule details ›
Chain: SA
Length: 295 amino acids
Theoretical weight: 32.87 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P14206 (Residues: 1-295; Coverage: 100%)
Gene names: Lamr1, P40-8, Rpsa
Sequence domains:
Large ribosomal subunit protein uL3 Chain: LB
Molecule details ›
Chain: LB
Length: 403 amino acids
Theoretical weight: 46.21 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P27659 (Residues: 1-403; Coverage: 100%)
Gene name: Rpl3
Sequence domains: Ribosomal protein L3
Small ribosomal subunit protein eS1 Chain: SB
Molecule details ›
Chain: SB
Length: 264 amino acids
Theoretical weight: 29.94 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P97351 (Residues: 1-264; Coverage: 100%)
Gene names: Rps3a, Rps3a1
Sequence domains: Ribosomal S3Ae family
Large ribosomal subunit protein uL4 Chain: LC
Molecule details ›
Chain: LC
Length: 419 amino acids
Theoretical weight: 47.26 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9D8E6 (Residues: 1-419; Coverage: 100%)
Gene name: Rpl4
Sequence domains:
Large ribosomal subunit protein uL18 Chain: LD
Molecule details ›
Chain: LD
Length: 297 amino acids
Theoretical weight: 34.46 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P47962 (Residues: 1-297; Coverage: 100%)
Gene name: Rpl5
Sequence domains:
Large ribosomal subunit protein eL6 Chain: LE
Molecule details ›
Chain: LE
Length: 296 amino acids
Theoretical weight: 33.59 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P47911 (Residues: 1-296; Coverage: 100%)
Gene name: Rpl6
Sequence domains:
Large ribosomal subunit protein uL30 Chain: LF
Molecule details ›
Chain: LF
Length: 270 amino acids
Theoretical weight: 31.49 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P14148 (Residues: 1-270; Coverage: 100%)
Gene name: Rpl7
Sequence domains:
Large ribosomal subunit protein eL8 Chain: LG
Molecule details ›
Chain: LG
Length: 266 amino acids
Theoretical weight: 30.04 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P12970 (Residues: 1-266; Coverage: 100%)
Gene names: Rpl7a, Surf-3, Surf3
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Large ribosomal subunit protein uL6 Chain: LH
Molecule details ›
Chain: LH
Length: 192 amino acids
Theoretical weight: 21.92 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P51410 (Residues: 1-192; Coverage: 100%)
Gene name: Rpl9
Sequence domains: Ribosomal protein L6
Large ribosomal subunit protein uL16 Chain: LI
Molecule details ›
Chain: LI
Length: 214 amino acids
Theoretical weight: 24.66 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q6ZWV3 (Residues: 1-214; Coverage: 100%)
Gene names: Qm, Rpl10
Sequence domains: Ribosomal protein L16p/L10e
Large ribosomal subunit protein uL5 Chain: LJ
Molecule details ›
Chain: LJ
Length: 178 amino acids
Theoretical weight: 20.29 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CXW4 (Residues: 1-178; Coverage: 100%)
Gene name: Rpl11
Sequence domains:
Large ribosomal subunit protein eL13 Chain: LL
Molecule details ›
Chain: LL
Length: 211 amino acids
Theoretical weight: 24.36 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P47963 (Residues: 1-211; Coverage: 100%)
Gene name: Rpl13
Sequence domains: Ribosomal protein L13e
Large ribosomal subunit protein eL14 Chain: LM
Molecule details ›
Chain: LM
Length: 217 amino acids
Theoretical weight: 23.62 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CR57 (Residues: 1-217; Coverage: 100%)
Gene name: Rpl14
Sequence domains: Ribosomal protein L14
Large ribosomal subunit protein eL15 Chain: LN
Molecule details ›
Chain: LN
Length: 204 amino acids
Theoretical weight: 24.21 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CZM2 (Residues: 1-204; Coverage: 100%)
Gene name: Rpl15
Sequence domains: Ribosomal L15
Large ribosomal subunit protein uL13 Chain: LO
Molecule details ›
Chain: LO
Length: 203 amino acids
Theoretical weight: 23.52 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P19253 (Residues: 1-203; Coverage: 100%)
Gene names: P198, Rpl13a, Tstap198-7
Sequence domains: Ribosomal protein L13
Large ribosomal subunit protein uL22 Chain: LP
Molecule details ›
Chain: LP
Length: 184 amino acids
Theoretical weight: 21.44 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CPR4 (Residues: 1-184; Coverage: 100%)
Gene name: Rpl17
Sequence domains: Ribosomal protein L22p/L17e
Large ribosomal subunit protein eL18 Chain: LQ
Molecule details ›
Chain: LQ
Length: 188 amino acids
Theoretical weight: 21.7 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P35980 (Residues: 1-188; Coverage: 100%)
Gene name: Rpl18
Sequence domains: Ribosomal protein 60S L18 and 50S L18e
Large ribosomal subunit protein eL19 Chain: LR
Molecule details ›
Chain: LR
Length: 196 amino acids
Theoretical weight: 23.54 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P84099 (Residues: 1-196; Coverage: 100%)
Gene name: Rpl19
Sequence domains: Ribosomal protein L19e
Large ribosomal subunit protein eL20 Chain: LS
Molecule details ›
Chain: LS
Length: 176 amino acids
Theoretical weight: 20.78 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62717 (Residues: 1-176; Coverage: 100%)
Gene name: Rpl18a
Sequence domains: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Large ribosomal subunit protein eL21 Chain: LT
Molecule details ›
Chain: LT
Length: 160 amino acids
Theoretical weight: 18.62 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: O09167 (Residues: 1-160; Coverage: 100%)
Gene name: Rpl21
Sequence domains: Ribosomal protein L21e
Large ribosomal subunit protein eL22 Chain: LU
Molecule details ›
Chain: LU
Length: 128 amino acids
Theoretical weight: 14.78 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P67984 (Residues: 1-128; Coverage: 100%)
Gene name: Rpl22
Sequence domains: Ribosomal L22e protein family
Large ribosomal subunit protein uL14 Chain: LV
Molecule details ›
Chain: LV
Length: 140 amino acids
Theoretical weight: 14.89 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62830 (Residues: 1-140; Coverage: 100%)
Gene name: Rpl23
Sequence domains: Ribosomal protein L14p/L23e
Large ribosomal subunit protein eL24 Chain: LW
Molecule details ›
Chain: LW
Length: 157 amino acids
Theoretical weight: 17.83 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q8BP67 (Residues: 1-157; Coverage: 100%)
Gene name: Rpl24
Sequence domains: Ribosomal protein L24e
Large ribosomal subunit protein uL23 Chain: LX
Molecule details ›
Chain: LX
Length: 156 amino acids
Theoretical weight: 17.74 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62751 (Residues: 1-156; Coverage: 100%)
Gene name: Rpl23a
Sequence domains:
Large ribosomal subunit protein uL24 Chain: LY
Molecule details ›
Chain: LY
Length: 145 amino acids
Theoretical weight: 17.3 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P61255 (Residues: 1-145; Coverage: 100%)
Gene name: Rpl26
Sequence domains:
Large ribosomal subunit protein eL27 Chain: LZ
Molecule details ›
Chain: LZ
Length: 136 amino acids
Theoretical weight: 15.84 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P61358 (Residues: 1-136; Coverage: 100%)
Gene name: Rpl27
Sequence domains:
Large ribosomal subunit protein uL15 Chain: La
Molecule details ›
Chain: La
Length: 148 amino acids
Theoretical weight: 16.65 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P14115 (Residues: 1-148; Coverage: 100%)
Gene name: Rpl27a
Sequence domains: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Large ribosomal subunit protein eL29 Chain: Lb
Molecule details ›
Chain: Lb
Length: 160 amino acids
Theoretical weight: 17.64 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P47915 (Residues: 1-160; Coverage: 100%)
Gene names: Rpl29, Rpl43
Sequence domains: Ribosomal L29e protein family
Large ribosomal subunit protein eL30 Chain: Lc
Molecule details ›
Chain: Lc
Length: 115 amino acids
Theoretical weight: 12.81 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62889 (Residues: 1-115; Coverage: 100%)
Gene name: Rpl30
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Large ribosomal subunit protein eL31 Chain: Ld
Molecule details ›
Chain: Ld
Length: 125 amino acids
Theoretical weight: 14.49 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62900 (Residues: 1-125; Coverage: 100%)
Gene name: Rpl31
Sequence domains: Ribosomal protein L31e
Large ribosomal subunit protein eL32 Chain: Le
Molecule details ›
Chain: Le
Length: 135 amino acids
Theoretical weight: 15.9 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62911 (Residues: 1-135; Coverage: 100%)
Gene name: Rpl32
Sequence domains: Ribosomal protein L32
Large ribosomal subunit protein eL33 Chain: Lf
Molecule details ›
Chain: Lf
Length: 110 amino acids
Theoretical weight: 12.58 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: O55142 (Residues: 1-110; Coverage: 100%)
Gene name: Rpl35a
Sequence domains: Ribosomal protein L35Ae
Large ribosomal subunit protein eL34 Chain: Lg
Molecule details ›
Chain: Lg
Length: 117 amino acids
Theoretical weight: 13.33 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9D1R9 (Residues: 1-117; Coverage: 100%)
Gene name: Rpl34
Sequence domains: Ribosomal protein L34e
Large ribosomal subunit protein uL29 Chain: Lh
Molecule details ›
Chain: Lh
Length: 123 amino acids
Theoretical weight: 14.6 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q6ZWV7 (Residues: 1-123; Coverage: 100%)
Gene name: Rpl35
Sequence domains: Ribosomal L29 protein
Large ribosomal subunit protein eL36 Chain: Li
Molecule details ›
Chain: Li
Length: 105 amino acids
Theoretical weight: 12.29 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P47964 (Residues: 1-105; Coverage: 100%)
Gene name: Rpl36
Sequence domains: Ribosomal protein L36e
Large ribosomal subunit protein eL37 Chain: Lj
Molecule details ›
Chain: Lj
Length: 97 amino acids
Theoretical weight: 11.11 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9D823 (Residues: 1-97; Coverage: 100%)
Gene name: Rpl37
Sequence domains: Ribosomal protein L37e
Large ribosomal subunit protein eL38 Chain: Lk
Molecule details ›
Chain: Lk
Length: 70 amino acids
Theoretical weight: 8.22 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9JJI8 (Residues: 1-70; Coverage: 100%)
Gene name: Rpl38
Sequence domains: Ribosomal L38e protein family
Ubiquitin-ribosomal protein eL40 fusion protein Chain: Lm
Molecule details ›
Chain: Lm
Length: 128 amino acids
Theoretical weight: 14.76 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62984 (Residues: 1-128; Coverage: 100%)
Gene names: Uba52, Ubcep2
Sequence domains:
Small ribosomal subunit protein eS32 Chain: Ln
Molecule details ›
Chain: Ln
Length: 25 amino acids
Theoretical weight: 3.47 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62947 (Residues: 1-25; Coverage: 100%)
Gene name: Rpl41
Sequence domains: Ribosomal protein L41
Large ribosomal subunit protein eL42 Chain: Lo
Molecule details ›
Chain: Lo
Length: 106 amino acids
Theoretical weight: 12.48 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P83882 (Residues: 1-106; Coverage: 100%)
Gene names: Rpl36a, Rpl44
Sequence domains: Ribosomal protein L44
Large ribosomal subunit protein eL43 Chain: Lp
Molecule details ›
Chain: Lp
Length: 92 amino acids
Theoretical weight: 10.3 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P61514 (Residues: 1-92; Coverage: 100%)
Gene name: Rpl37a
Sequence domains: Ribosomal L37ae protein family
Large ribosomal subunit protein eL28 Chain: Lr
Molecule details ›
Chain: Lr
Length: 137 amino acids
Theoretical weight: 15.77 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P41105 (Residues: 1-137; Coverage: 100%)
Gene name: Rpl28
Sequence domains: Ribosomal L28e protein family
Small ribosomal subunit protein uS3 Chain: SD
Molecule details ›
Chain: SD
Length: 243 amino acids
Theoretical weight: 26.72 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62908 (Residues: 1-243; Coverage: 100%)
Gene name: Rps3
Sequence domains:
Small ribosomal subunit protein eS4 Chain: SE
Molecule details ›
Chain: SE
Length: 263 amino acids
Theoretical weight: 29.65 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62702 (Residues: 1-263; Coverage: 100%)
Gene names: Rps4, Rps4x
Sequence domains:
Small ribosomal subunit protein uS7 Chain: SF
Molecule details ›
Chain: SF
Length: 204 amino acids
Theoretical weight: 22.91 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P97461 (Residues: 1-204; Coverage: 100%)
Gene name: Rps5
Sequence domains: Ribosomal protein S7p/S5e
Small ribosomal subunit protein eS7 Chain: SH
Molecule details ›
Chain: SH
Length: 194 amino acids
Theoretical weight: 22.17 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62082 (Residues: 1-194; Coverage: 100%)
Gene name: Rps7
Sequence domains: Ribosomal protein S7e
Small ribosomal subunit protein eS8 Chain: SI
Molecule details ›
Chain: SI
Length: 208 amino acids
Theoretical weight: 24.26 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62242 (Residues: 1-208; Coverage: 100%)
Gene name: Rps8
Sequence domains: Ribosomal protein S8e
Small ribosomal subunit protein eS10 Chain: SK
Molecule details ›
Chain: SK
Length: 165 amino acids
Theoretical weight: 18.95 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P63325 (Residues: 1-165; Coverage: 100%)
Gene name: Rps10
Sequence domains: Plectin/S10 domain
Small ribosomal subunit protein uS17 Chain: SL
Molecule details ›
Chain: SL
Length: 158 amino acids
Theoretical weight: 18.47 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62281 (Residues: 1-158; Coverage: 100%)
Gene name: Rps11
Sequence domains:
Small ribosomal subunit protein uS19 Chain: SP
Molecule details ›
Chain: SP
Length: 145 amino acids
Theoretical weight: 17.08 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62843 (Residues: 1-145; Coverage: 100%)
Gene names: Rig, Rps15
Sequence domains: Ribosomal protein S19
Small ribosomal subunit protein uS9 Chain: SQ
Molecule details ›
Chain: SQ
Length: 146 amino acids
Theoretical weight: 16.48 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P14131 (Residues: 1-146; Coverage: 100%)
Gene name: Rps16
Sequence domains: Ribosomal protein S9/S16
Small ribosomal subunit protein eS17 Chain: SR
Molecule details ›
Chain: SR
Length: 135 amino acids
Theoretical weight: 15.55 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P63276 (Residues: 1-135; Coverage: 100%)
Gene name: Rps17
Sequence domains: Ribosomal S17
Small ribosomal subunit protein uS13 Chain: SS
Molecule details ›
Chain: SS
Length: 152 amino acids
Theoretical weight: 17.76 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62270 (Residues: 1-152; Coverage: 100%)
Gene name: Rps18
Sequence domains: Ribosomal protein S13/S18
Small ribosomal subunit protein eS19 Chain: ST
Molecule details ›
Chain: ST
Length: 145 amino acids
Theoretical weight: 16.12 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CZX8 (Residues: 1-145; Coverage: 100%)
Gene name: Rps19
Sequence domains: Ribosomal protein S19e
Small ribosomal subunit protein uS10 Chain: SU
Molecule details ›
Chain: SU
Length: 119 amino acids
Theoretical weight: 13.4 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P60867 (Residues: 1-119; Coverage: 100%)
Gene name: Rps20
Sequence domains: Ribosomal protein S10p/S20e
Small ribosomal subunit protein eS21 Chain: SV
Molecule details ›
Chain: SV
Length: 83 amino acids
Theoretical weight: 9.15 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9CQR2 (Residues: 1-83; Coverage: 100%)
Gene name: Rps21
Sequence domains: Ribosomal protein S21e
Small ribosomal subunit protein uS12 Chain: SX
Molecule details ›
Chain: SX
Length: 143 amino acids
Theoretical weight: 15.84 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62267 (Residues: 1-143; Coverage: 100%)
Gene name: Rps23
Sequence domains: Ribosomal protein S12/S23
Small ribosomal subunit protein eS26 Chain: Sa
Molecule details ›
Chain: Sa
Length: 115 amino acids
Theoretical weight: 13.05 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62855 (Residues: 1-115; Coverage: 100%)
Gene name: Rps26
Sequence domains: Ribosomal protein S26e
Small ribosomal subunit protein eS28 Chain: Sc
Molecule details ›
Chain: Sc
Length: 69 amino acids
Theoretical weight: 7.86 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62858 (Residues: 1-69; Coverage: 100%)
Gene name: Rps28
Sequence domains: Ribosomal protein S28e
Small ribosomal subunit protein uS14 Chain: Sd
Molecule details ›
Chain: Sd
Length: 56 amino acids
Theoretical weight: 6.69 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62274 (Residues: 1-56; Coverage: 100%)
Gene name: Rps29
Sequence domains: Ribosomal protein S14p/S29e
Small ribosomal subunit protein RACK1 Chain: Sg
Molecule details ›
Chain: Sg
Length: 317 amino acids
Theoretical weight: 35.12 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P68040 (Residues: 1-317; Coverage: 100%)
Gene names: Gnb2-rs1, Gnb2l1, Rack1
Sequence domains: WD domain, G-beta repeat
Small ribosomal subunit protein uS5 Chain: SC
Molecule details ›
Chain: SC
Length: 293 amino acids
Theoretical weight: 31.28 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P25444 (Residues: 1-293; Coverage: 100%)
Gene names: Llrep3, Rps2, Rps4
Sequence domains:
Small ribosomal subunit protein eS6 Chain: SG
Molecule details ›
Chain: SG
Length: 249 amino acids
Theoretical weight: 28.75 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62754 (Residues: 1-249; Coverage: 100%)
Gene name: Rps6
Sequence domains: Ribosomal protein S6e
Small ribosomal subunit protein uS4 Chain: SJ
Molecule details ›
Chain: SJ
Length: 194 amino acids
Theoretical weight: 22.64 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q6ZWN5 (Residues: 1-194; Coverage: 100%)
Gene name: Rps9
Sequence domains:
Small ribosomal subunit protein uS15 Chain: SN
Molecule details ›
Chain: SN
Length: 151 amino acids
Theoretical weight: 17.26 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62301 (Residues: 1-151; Coverage: 100%)
Gene name: Rps13
Sequence domains:
Small ribosomal subunit protein uS11 Chain: SO
Molecule details ›
Chain: SO
Length: 151 amino acids
Theoretical weight: 16.3 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62264 (Residues: 1-151; Coverage: 100%)
Gene name: Rps14
Sequence domains: Ribosomal protein S11
Small ribosomal subunit protein uS8 Chain: SW
Molecule details ›
Chain: SW
Length: 130 amino acids
Theoretical weight: 14.87 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62245 (Residues: 1-130; Coverage: 100%)
Gene name: Rps15a
Sequence domains: Ribosomal protein S8
Small ribosomal subunit protein eS24 Chain: SY
Molecule details ›
Chain: SY
Length: 133 amino acids
Theoretical weight: 15.46 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62849 (Residues: 1-133; Coverage: 100%)
Gene name: Rps24
Sequence domains: Ribosomal protein S24e
Small ribosomal subunit protein eS25 Chain: SZ
Molecule details ›
Chain: SZ
Length: 125 amino acids
Theoretical weight: 13.78 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62852 (Residues: 1-125; Coverage: 100%)
Gene name: Rps25
Sequence domains: S25 ribosomal protein
Small ribosomal subunit protein eS27 Chain: Sb
Molecule details ›
Chain: Sb
Length: 84 amino acids
Theoretical weight: 9.48 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q6ZWU9 (Residues: 1-84; Coverage: 100%)
Gene name: Rps27
Sequence domains: Ribosomal protein S27
Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein Chain: Se
Molecule details ›
Chain: Se
Length: 133 amino acids
Theoretical weight: 14.44 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: P62862 (Residues: 1-133; Coverage: 100%)
Gene name: Fau
Sequence domains: Ribosomal protein S30
Large ribosomal subunit protein eL39 Chain: Ll
Molecule details ›
Chain: Ll
Length: 51 amino acids
Theoretical weight: 6.43 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q505A8 (Residues: 1-51; Coverage: 100%)
Gene name: Rpl39
Sequence domains: Ribosomal L39 protein
Mus musculus 28S ribosomal RNA Chain: L5
Molecule details ›
Chain: L5
Length: 4731 nucleotides
Theoretical weight: 1530.91 KDa
Sequence domains: Eukaryotic large subunit ribosomal RNA
Mus musculus 5S ribosomal RNA Chain: L7
Molecule details ›
Chain: L7
Length: 120 nucleotides
Theoretical weight: 38.69 KDa
Sequence domains: 5S ribosomal RNA
Mus musculus 5.8S ribosomal RNA Chain: L8
Molecule details ›
Chain: L8
Length: 158 nucleotides
Theoretical weight: 50.8 KDa
Sequence domains: 5.8S ribosomal RNA
Mus musculus 18S ribosomal RNA Chain: S2
Molecule details ›
Chain: S2
Length: 1870 nucleotides
Theoretical weight: 603.1 KDa
Sequence domains: Eukaryotic small subunit ribosomal RNA
tRNA Chain: S6
Molecule details ›
Chain: S6
Length: 75 nucleotides
Theoretical weight: 24.23 KDa
Sequence domains: tRNA

Ligands and Environments

2 bound ligands:
Ligand MG 271 x MG
Ligand ZN 7 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.82Å
Relevant EMDB volumes: EMD-30432

Quick links

Citations

2 review citations

Specialized Ribosomes in Health and Disease.
Miller et al. (2023)
1 more