7e8f

Electron Microscopy
3.18Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero octamer (preferred)
PDBe Complex ID:
PDB-CPX-209651 (preferred)
Entry contents:
8 distinct polypeptide molecules
Macromolecules (8 distinct):
Spike protein S1 Chain: A
Molecule details ›
Chain: A
Length: 291 amino acids
Theoretical weight: 33.04 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 13-303; Coverage: 23%)
Gene names: 2, S
Sequence domains: Betacoronavirus-like spike glycoprotein S1, N-terminal
N9 H Chain: H
Molecule details ›
Chain: H
Length: 230 amino acids
Theoretical weight: 24.3 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
N9 L Chain: L
Molecule details ›
Chain: L
Length: 212 amino acids
Theoretical weight: 22.53 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
368-2 H Chain: C
Molecule details ›
Chain: C
Length: 230 amino acids
Theoretical weight: 24.36 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
368-2 L Chain: B
Molecule details ›
Chain: B
Length: 219 amino acids
Theoretical weight: 23.9 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
604 H Chain: D
Molecule details ›
Chain: D
Length: 222 amino acids
Theoretical weight: 23.37 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
604 L Chain: E
Molecule details ›
Chain: E
Length: 214 amino acids
Theoretical weight: 23.29 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
Spike protein S1 Chain: R
Molecule details ›
Chain: R
Length: 223 amino acids
Theoretical weight: 25.12 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 319-541; Coverage: 18%)
Gene names: 2, S
Sequence domains: Betacoronavirus spike glycoprotein S1, receptor binding

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.18Å
Relevant EMDB volumes: EMD-31017
Expression system: Homo sapiens