› 7fdy

X-ray diffraction
3.1Å resolution

Structure of OmpF1

Released:
DOI: 10.2210/pdb7fdy/pdb
Model geometry
Fit model/data
PDB entry 7fdy coloured by chain, front view.
PDB entry 7fdy coloured by chain, side view.
PDB entry 7fdy coloured by chain, top view.
Source organism: Escherichia coli
Primary publication:
Design and directed evolution of noncanonical β-stereoselective metalloglycosidases.
Jeong WJ, Song WJ
OpenAccess logo Nat Commun 13 6844 (2022)
PMID: 36369431

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-136399 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Outer membrane porin F Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 341 amino acids
Theoretical weight: 37.18 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli
UniProt:
  • Canonical: P02931 (Residues: 23-362; Coverage: 100%)
Gene names: JW0912, b0929, cmlB, coa, cry, ompF, tolF
Sequence domains: Gram-negative porin

Ligands and Environments

1 bound ligand:
Ligand ZN 3 x ZN
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: PAL/PLS BEAMLINE 7A (6B, 6C1)
Spacegroup: C2
Unit cell:
a: 128.6Å b: 140.39Å c: 110.86Å
α: 90° β: 120.01° γ: 90°
R-values:
R R work R free
0.271 0.269 0.295
Expression system: Escherichia coli

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