› 7jvi

X-ray diffraction
1.85Å resolution

Crystal structure of a beta-helix domain retrieved from capybara gut metagenome

Released:
DOI: 10.2210/pdb7jvi/pdb
PDB entry 7jvi coloured by chain, front view.
PDB entry 7jvi coloured by chain, side view.
PDB entry 7jvi coloured by chain, top view.
Source organism: metagenome
Primary publication:
Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides.
Cabral L, Persinoti GF, Paixão DAA, Martins MP, Morais MAB, Chinaglia M, Domingues MN, Sforca ML, Pirolla RAS, Generoso WC, Santos CA, Maciel LF, Terrapon N, Lombard V, Henrissat B, Murakami MT
Nat Commun 13 629 (2022)
PMID: 35110564

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-168311 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Beta-helix domain Chains: A, B
Molecule details ›
Chains: A, B
Length: 847 amino acids
Theoretical weight: 93.41 KDa
Source organism: metagenome
Expression system: Escherichia coli

Ligands and Environments

1 bound ligand:
Ligand CA 2 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 2
Spacegroup: P212121
Unit cell:
a: 39.979Å b: 144.507Å c: 169.492Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.189 0.187 0.213
Expression system: Escherichia coli

Quick links

Citations

1 review citation

Targeting Gut Microbiota With Natural Polysaccharides: Effective Interventions Against High-Fat Diet-Induced Metabolic Diseases.
Sun et al. (2022)
12 other articles

1 mention without citation

Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides.
Cabral et al. (2022)