› 7kd9

X-ray diffraction
1.94Å resolution

Crystal Structure of Gallic Acid Decarboxylase from Arxula adeninivorans

Released:
DOI: 10.2210/pdb7kd9/pdb
PDB entry 7kd9 coloured by chain, front view.
PDB entry 7kd9 coloured by chain, side view.
PDB entry 7kd9 coloured by chain, top view.
Source organism: Blastobotrys adeninivorans
Primary publication:
Crystal structures of non-oxidative decarboxylases reveal a new mechanism of action with a catalytic dyad and structural twists.
Zeug M, Markovic N, Iancu CV, Tripp J, Oreb M, Choe JY
Sci Rep 11 3056 (2021)
PMID: 33542397

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-100324 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
SnoaL-like domain-containing protein Chains: A, B, C, D, E, F, G, H, I
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I
Length: 231 amino acids
Theoretical weight: 27.24 KDa
Source organism: Blastobotrys adeninivorans
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A060TAG5 (Residues: 1-231; Coverage: 100%)
Gene names: AGDC1, GNLVRS02_ARAD1C45716g
Sequence domains: SnoaL-like domain

Ligands and Environments

1 bound ligand:
Ligand K 3 x K
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-BM-B
Spacegroup: P21212
Unit cell:
a: 91.632Å b: 265.301Å c: 93.728Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.193 0.191 0.238
Expression system: Escherichia coli

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Citations

1 review citation

Enzymatic Conversion of CO2: From Natural to Artificial Utilization.
Bierbaumer et al. (2023)
2 other articles

1 mention without citation

Crystal structures of non-oxidative decarboxylases reveal a new mechanism of action with a catalytic dyad and structural twists.
Zeug et al. (2021)