› 7m5h

X-ray diffraction
2.15Å resolution

Crystal structure of conserved protein from Enterococcus faecalis V583

Released:
DOI: 10.2210/pdb7m5h/pdb
PDB entry 7m5h coloured by chain, front view.
PDB entry 7m5h coloured by chain, side view.
PDB entry 7m5h coloured by chain, top view.
Source organism: Enterococcus faecalis V583
Entry authors: Nocek B, Wu R, Moy S, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-182777 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleoside 2-deoxyribosyltransferase Chains: A, B
Molecule details ›
Chains: A, B
Length: 162 amino acids
Theoretical weight: 17.93 KDa
Source organism: Enterococcus faecalis V583
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q831Y8 (Residues: 1-159; Coverage: 100%)
Gene name: EF_2354
Sequence domains: Nucleoside 2-deoxyribosyltransferase

Ligands and Environments

2 bound ligands:
Ligand GOL 3 x GOL
Ligand EDO 3 x EDO
1 modified residue:
Ligand MSE 4 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: F4132
Unit cell:
a: 219.901Å b: 219.901Å c: 219.901Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.177 0.175 0.217
Expression system: Escherichia coli BL21(DE3)

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