7n6d

X-ray diffraction
2.3Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-102960 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Ig-like domain-containing protein Chains: A, E, I, M
Molecule details ›
Chains: A, E, I, M
Length: 278 amino acids
Theoretical weight: 32.13 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A140T913 (Residues: 25-302; Coverage: 80%)
Gene name: HLA-A
Sequence domains:
Beta-2-microglobulin Chains: B, F, J, N
Molecule details ›
Chains: B, F, J, N
Length: 100 amino acids
Theoretical weight: 11.88 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P61769 (Residues: 21-119; Coverage: 100%)
Gene names: B2M, CDABP0092, HDCMA22P
Sequence domains: Immunoglobulin C1-set domain
Spike protein S1 Chains: C, G, K, O
Molecule details ›
Chains: C, G, K, O
Length: 9 amino acids
Theoretical weight: 1.15 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Not provided
UniProt:
  • Canonical: P0DTC2 (Residues: 269-277; Coverage: 1%)
Gene names: 2, S

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Spacegroup: P3112
Unit cell:
a: 85.197Å b: 85.197Å c: 442.85Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.214 0.213 0.247
Expression systems:
  • Escherichia coli
  • Not provided