› 7oo5

X-ray diffraction
1.85Å resolution

Crystal structure of the lignin peroxidase (ApeLiP) from Agrocybe pediades

Released:
DOI: 10.2210/pdb7oo5/pdb
PDB entry 7oo5 coloured by chain, front view.
PDB entry 7oo5 coloured by chain, side view.
PDB entry 7oo5 coloured by chain, top view.
Source organism: Agrocybe pediades
Primary publication:
Agaricales Mushroom Lignin Peroxidase: From Structure-Function to Degradative Capabilities.
Sánchez-Ruiz MI, Ayuso-Fernández I, Rencoret J, González-Ramírez AM, Linde D, Davó-Siguero I, Romero A, Gutiérrez A, Martínez AT, Ruiz-Dueñas FJ
Antioxidants (Basel) 10 (2021)
PMID: 34573078

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-168590 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
lignin peroxidase Chain: A
Molecule details ›
Chain: A
Length: 331 amino acids
Theoretical weight: 34.3 KDa
Source organism: Agrocybe pediades
Expression system: Escherichia coli

Ligands and Environments

3 bound ligands:
Ligand HEM 1 x HEM
Ligand CA 2 x CA
Ligand ZN 2 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALBA BEAMLINE XALOC
Spacegroup: P212121
Unit cell:
a: 48.126Å b: 74.95Å c: 82.768Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.234 0.232 0.269
Expression system: Escherichia coli

Quick links

Citations

1 review citation

Ancestral sequence reconstruction as a tool to study the evolution of wood decaying fungi.
Ayuso-Fernández et al. (2022)
6 other articles

1 mention without citation

Agaricales Mushroom Lignin Peroxidase: From Structure-Function to Degradative Capabilities.
Sánchez-Ruiz et al. (2021)