› 7ook

X-ray diffraction
2.23Å resolution

Bacteriophage PRD1 Major Capsid Protein P3 in complex with CPZ

Released:
DOI: 10.2210/pdb7ook/pdb
Model geometry
Fit model/data
PDB entry 7ook coloured by chain, front view.
PDB entry 7ook coloured by chain, side view.
PDB entry 7ook coloured by chain, top view.
Source organism: Enterobacteria phage PRD1
Primary publication:
Bacteriophage PRD1 as a nanoscaffold for drug loading
Duyvesteyn HME, Santos-Perez I, Peccati F, Martinez-Castillo A, Walter TS, Reguera D, Goni FM, Jimenez-Oses G, Oksanen HM, Stuart DI, Abrescia NGA
Nanoscale 13 19875-19883 (2021)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-149665 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Major capsid protein P3 Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 395 amino acids
Theoretical weight: 43.48 KDa
Source organism: Enterobacteria phage PRD1
UniProt:
  • Canonical: P22535 (Residues: 1-395; Coverage: 100%)
Gene name: III
Sequence domains: P3 major capsid protein

Ligands and Environments

4 bound ligands:
Ligand NA 5 x NA
Ligand MPD 10 x MPD
Ligand Z80 3 x Z80
Ligand CL 3 x CL
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: DIAMOND BEAMLINE I24
Spacegroup: P212121
Unit cell:
a: 116.75Å b: 122.75Å c: 126.32Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.178 0.176 0.216

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