7qpd

Electron Microscopy
3.73Å resolution

Structure of the human MHC I peptide-loading complex editing module

Released:
Source organism: Homo sapiens
Related structures: EMD-14119

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero pentamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-127517 (preferred)
Entry contents:
5 distinct polypeptide molecules
Macromolecules (7 distinct):
Beta-2-microglobulin Chain: B
Molecule details ›
Chain: B
Length: 99 amino acids
Theoretical weight: 11.75 KDa
Source organism: Homo sapiens
UniProt:
  • Canonical: P61769 (Residues: 21-119; Coverage: 100%)
Gene names: B2M, CDABP0092, HDCMA22P
Sequence domains: Immunoglobulin C1-set domain
Tapasin Chain: T
Molecule details ›
Chain: T
Length: 428 amino acids
Theoretical weight: 45.76 KDa
Source organism: Homo sapiens
UniProt:
  • Canonical: O15533 (Residues: 21-448; Coverage: 100%)
Gene names: NGS17, TAPA, TAPBP
Sequence domains: Immunoglobulin C1-set domain
Protein disulfide-isomerase A3 Chain: E
Molecule details ›
Chain: E
Length: 481 amino acids
Theoretical weight: 54.34 KDa
Source organism: Homo sapiens
UniProt:
  • Canonical: P30101 (Residues: 25-505; Coverage: 100%)
Gene names: ERP57, ERP60, GRP58, PDIA3
Sequence domains:
HLA class I histocompatibility antigen, A alpha chain Chain: M
Molecule details ›
Chain: M
Length: 341 amino acids
Theoretical weight: 38.36 KDa
Source organism: Homo sapiens
UniProt:
  • Canonical: P04439 (Residues: 25-365; Coverage: 100%)
Gene names: HLA-A, HLAA
Sequence domains:
Calreticulin Chain: C
Molecule details ›
Chain: C
Length: 400 amino acids
Theoretical weight: 46.52 KDa
Source organism: Homo sapiens
UniProt:
  • Canonical: P27797 (Residues: 18-417; Coverage: 100%)
Gene names: CALR, CRTC
Sequence domains: Calreticulin family

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer : NEW Components: NAG, BMA, MAN, GLC
No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.73Å
Relevant EMDB volumes: EMD-14119