7r8h

X-ray diffraction
2.54Å resolution

Crystal structure of Pseudooceanicola lipolyticus Argonaute bound to 5' p guide DNA

Released:
Model geometry
Fit model/data

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-104338 (preferred)
Entry contents:
1 distinct polypeptide molecule
1 distinct DNA molecule
Macromolecules (2 distinct):
Piwi domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 789 amino acids
Theoretical weight: 87.91 KDa
Source organism: Pseudooceanicola lipolyticus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A2M8J4C7 (Residues: 1-789; Coverage: 100%)
Gene name: CVM52_05730
DNA (5'-D(*TP*TP*AP*CP*TP*GP*CP*AP*CP*AP*GP*GP*TP*GP*AP*CP*GP*A)-3') Chain: T
Molecule details ›
Chain: T
Length: 18 nucleotides
Theoretical weight: 5.54 KDa
Source organism: Pseudooceanicola lipolyticus
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: CHESS BEAMLINE F1
Spacegroup: I23
Unit cell:
a: 199.823Å b: 199.823Å c: 199.823Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.202 0.2 0.239
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided