7rxd

Electron Microscopy
3.6Å resolution

CryoEM structure of RBD domain of COVID-19 in complex with Legobody

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero pentamer (preferred)
PDBe Complex ID:
PDB-CPX-279532 (preferred)
Entry contents:
5 distinct polypeptide molecules
Macromolecules (6 distinct):
Immunoglobulin G-binding protein A; Immunoglobulin G-binding protein G Chain: B
Molecule details ›
Chain: B
Length: 545 amino acids
Theoretical weight: 59.23 KDa
Source organisms: Expression system: Escherichia coli
UniProt:
  • Canonical: P99134 (Residues: 31-42, 43-151; Coverage: 28%)
  • Canonical: P06654 (Residues: 295-352; Coverage: 14%)
Gene names: SA0107, spa, spg
Sequence domains:
Fab_8D3_2 heavy chain Chain: H
Molecule details ›
Chain: H
Length: 234 amino acids
Theoretical weight: 25.25 KDa
Source organism: Mus musculus
Expression system: Homo sapiens
Fab_8D3_2 light chain Chain: L
Nb_RBD Chain: N
Spike protein S1 Chain: R

Ligands and Environments

Carbohydrate polymer : NEW Components: GLC
No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this EM entry.
Resolution: 3.6Å
Relevant EMDB volumes: EMD-24729
Expression systems:
  • Escherichia coli
  • Homo sapiens