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› 7vdn

X-ray diffraction
0.93Å resolution

High resolution crystal structure of Sperm Whale Myoglobin in the carbonmonoxy form

Released:
DOI: 10.2210/pdb7vdn/pdb
Model geometry
Fit model/data
PDB entry 7vdn coloured by chain, front view.
PDB entry 7vdn coloured by chain, side view.
PDB entry 7vdn coloured by chain, top view.
Source organism: Physeter catodon
Primary publication:
X-ray fluorescence holography of biological metal sites: Application to myoglobin.
Sato-Tomita A, Ang AKR, Kimura K, Marumi R, Happo N, Matsushita T, Park SY, Shibayama N, Sasaki YC, Hayashi K
Biochem Biophys Res Commun 635 277-282 (2022)
PMID: 36308907

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-135409 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Myoglobin Chain: A
Molecule details ›
Chain: A
Length: 151 amino acids
Theoretical weight: 17.05 KDa
Source organism: Physeter catodon
UniProt:
  • Canonical: P02185 (Residues: 2-152; Coverage: 98%)
Gene name: MB
Sequence domains: Globin

Ligands and Environments

3 bound ligands:
Ligand SO4 3 x SO4
Ligand HEM 1 x HEM
Ligand CMO 1 x CMO
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: RIGAKU MICROMAX-007 HF
Spacegroup: P21
Unit cell:
a: 34.403Å b: 30.702Å c: 63.804Å
α: 90° β: 105.565° γ: 90°
R-values:
R R work R free
0.188 0.187 0.21

Quick links

Citations

1 citations in other articles

Development of serial X-ray fluorescence holography for radiation-sensitive protein crystals.
Ang et al. (2023)