› 7xfy

X-ray diffraction
2.67Å resolution

Crystal structure of the ternary complex of Peptidoglycan recognition protein, PGRP-S with hexanoic and tartaric acids at 2.67 A resolution.

Released:
DOI: 10.2210/pdb7xfy/pdb
PDB entry 7xfy coloured by chain, front view.
PDB entry 7xfy coloured by chain, side view.
PDB entry 7xfy coloured by chain, top view.
Source organism: Camelus dromedarius
Entry authors: Maurya A, Singh PK, Viswanathan V, Sharma P, Sharma S, Singh TP

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-190401 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peptidoglycan recognition protein 1 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 171 amino acids
Theoretical weight: 19.01 KDa
Source organism: Camelus dromedarius
UniProt:
  • Canonical: Q9GK12 (Residues: 23-193; Coverage: 99%)
Gene names: PGLYRP, PGLYRP1, PGRP
Sequence domains: N-acetylmuramoyl-L-alanine amidase

Ligands and Environments

6 bound ligands:
Ligand EDO 6 x EDO
Ligand TLA 3 x TLA
Ligand CL 1 x CL
Ligand ACT 1 x ACT
Ligand 6NA 1 x 6NA
Ligand GOL 1 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE MASSIF-1
Spacegroup: I222
Unit cell:
a: 89.583Å b: 101.026Å c: 163.412Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.18 0.175 0.266

Quick links