We've built a new version of this page with an interactive 3D viewer. Try it out in beta and help us improve:

› 7yro

X-ray diffraction
2.42Å resolution

Crystal structure of mango fucosyltransferase 13

Released:
DOI: 10.2210/pdb7yro/pdb
Model geometry
Fit model/data
PDB entry 7yro coloured by chain, front view.
PDB entry 7yro coloured by chain, side view.
PDB entry 7yro coloured by chain, top view.
Source organism: Mangifera indica
Primary publication:
Crystal structure of mango α1,3/α1,4-fucosyltransferase elucidates unique elements that regulate Lewis A-dominant oligosaccharide assembly.
Okada T, Teramoto T, Ihara H, Ikeda Y, Kakuta Y
Glycobiology 34 (2024)
PMID: 38376259

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-226595 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Fucosyltransferase Chains: A, B, C, D, E, F, G, H
Molecule details ›
Chains: A, B, C, D, E, F, G, H
Length: 410 amino acids
Theoretical weight: 46.16 KDa
Source organism: Mangifera indica
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: A0A292GKJ7 (Residues: 1-410; Coverage: 100%)
Gene name: FUT13
Sequence domains: Glycosyltransferase family 10 (fucosyltransferase) C-term

Ligands and Environments

5 bound ligands:
Ligand GOL 21 x GOL
Ligand ACY 7 x ACY
Ligand PO4 1 x PO4
Ligand PPV 7 x PPV
Ligand NAG 5 x NAG
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: SPRING-8 BEAMLINE BL45XU
Spacegroup: P212121
Unit cell:
a: 86.7Å b: 163.61Å c: 274.9Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.211 0.21 0.248
Expression system: Spodoptera frugiperda

Quick links