› 8b2f

X-ray diffraction
1.18Å resolution

SH3-like cell wall binding domain of the GH24 family muramidase from Trichophaea saccata in complex with triglycine

Released:
DOI: 10.2210/pdb8b2f/pdb
Model geometry
Fit model/data
PDB entry 8b2f coloured by chain, front view.
PDB entry 8b2f coloured by chain, side view.
PDB entry 8b2f coloured by chain, top view.
Source organisms:
Primary publication:
Module walking using an SH3-like cell-wall-binding domain leads to a new GH184 family of muramidases.
Moroz OV, Blagova E, Lebedev AA, Skov LK, Pache RA, Schnorr KM, Kiemer L, Friis EP, Nymand-Grarup S, Ming L, Ye L, Klausen M, Cohn MT, Schmidt EGW, Davies GJ, Wilson KS
OpenAccess logo Acta Crystallogr D Struct Biol (2023)
PMID: 37428847

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-288990 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Ig-like domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 74 amino acids
Theoretical weight: 8.01 KDa
Source organism: Trichophaea saccata
Expression system: Aspergillus oryzae
UniProt:
  • Canonical: A0AA82WPC9 (Residues: 1-74; Coverage: 100%)
GLY-GLY-GLY Chains: H, T
Molecule details ›
Chains: H, T
Length: 3 amino acids
Theoretical weight: 189 Da
Source organism: Staphylococcus aureus
Expression system: Not provided

Ligands and Environments

2 bound ligands:
Ligand EDO 4 x EDO
Ligand ZN 1 x ZN
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P1
Unit cell:
a: 26.105Å b: 27.234Å c: 50.039Å
α: 76.679° β: 81.267° γ: 72.662°
R-values:
R R work R free
0.115 0.113 0.146
Expression systems:
  • Aspergillus oryzae
  • Not provided

Quick links

Citations

1 citations in other articles

Trophic Position of the White Worm (Enchytraeus albidus) in the Context of Digestive Enzyme Genes Revealed by Transcriptomics Analysis.
Gajda et al. (2024)

1 mention without citation

Module walking using an SH3-like cell-wall-binding domain leads to a new GH184 family of muramidases.
Moroz et al. (2023)