We've built a new version of this page with an interactive 3D viewer. Try it out in beta and help us improve:

› 8iqa

X-ray diffraction
1.55Å resolution

Crystal structure of Pyruvic Oxime Dioxygenase (POD) from Alcaligenes faecalis deleted N-terminal 18 residues

Released:
DOI: 10.2210/pdb8iqa/pdb
Model geometry
Fit model/data
PDB entry 8iqa coloured by chain, front view.
PDB entry 8iqa coloured by chain, side view.
PDB entry 8iqa coloured by chain, top view.
Source organism: Alcaligenes faecalis subsp. faecalis NBRC 13111
Primary publication:
Structural characterization of pyruvic oxime dioxygenase, a key enzyme in heterotrophic nitrification.
Tsujino S, Yamada Y, Senda M, Nakamura A, Senda T, Fujiwara T
J Bacteriol 207 e0034224 (2025)
PMID: 39772954

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-268566 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Class II aldolase/adducin N-terminal domain-containing protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 243 amino acids
Theoretical weight: 26.95 KDa
Source organism: Alcaligenes faecalis subsp. faecalis NBRC 13111
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A0A2N3A3 (Residues: 19-261; Coverage: 93%)
Gene names: DF183_08950, MXF72_16150
Sequence domains: Class II Aldolase and Adducin N-terminal domain

Ligands and Environments

1 bound ligand:
Ligand NI 4 x NI
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: PHOTON FACTORY BEAMLINE BL-17A
Spacegroup: P212121
Unit cell:
a: 49.22Å b: 135.045Å c: 138.04Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.192 0.191 0.213
Expression system: Escherichia coli BL21(DE3)

Quick links