› 8k0y

X-ray diffraction
2.28Å resolution

Crystal structure of a medaka mascRNA U23G

Released:
DOI: 10.2210/pdb8k0y/pdb
Model geometry
Fit model/data
PDB entry 8k0y coloured by chain, front view.
PDB entry 8k0y coloured by chain, side view.
PDB entry 8k0y coloured by chain, top view.
Source organism: Oryzias latipes
Entry authors: He Y, Deng J, Lin X, Huang L

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-303305 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
RNA (56-MER) Chains: A, B
Molecule details ›
Chains: A, B
Length: 56 nucleotides
Theoretical weight: 18 KDa
Source organism: Oryzias latipes
Expression system: Not provided
Sequence domains: MALAT1-associated small cytoplasmic RNA/MEN beta RNA

Ligands and Environments

2 bound ligands:
Ligand IR 7 x IR
Ligand NA 13 x NA
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: SSRF BEAMLINE BL10U2
Spacegroup: C2
Unit cell:
a: 159.36Å b: 29.25Å c: 98.08Å
α: 90° β: 118.56° γ: 90°
R-values:
R R work R free
0.249 0.249 0.285
Expression system: Not provided

Quick links