› 8onm

X-ray diffraction
1.85Å resolution

Crystal structure of D-amino acid aminotransferase from Aminobacterium colombiense point mutant E113A complexed with D-glutamate

Released:
DOI: 10.2210/pdb8onm/pdb
Model geometry
Fit model/data
PDB entry 8onm coloured by chain, front view.
PDB entry 8onm coloured by chain, side view.
PDB entry 8onm coloured by chain, top view.
Source organism: Aminobacterium colombiense
Entry authors: Matyuta IO, Boyko KM, Minyaev ME, Shilova SA, Bezsudnova EY, Popov VO

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-112690 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Aminotransferase class IV Chains: A, B
Molecule details ›
Chains: A, B
Length: 277 amino acids
Theoretical weight: 30.92 KDa
Source organism: Aminobacterium colombiense
Expression system: Escherichia coli
UniProt:
  • Canonical: D5EHC5 (Residues: 1-275; Coverage: 100%)
Gene name: Amico_1844
Sequence domains: Amino-transferase class IV

Ligands and Environments

4 bound ligands:
Ligand EDO 4 x EDO
Ligand NO3 4 x NO3
Ligand PMP 2 x PMP
Ligand PW0 1 x PW0
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: RIGAKU
Spacegroup: P212121
Unit cell:
a: 61.4Å b: 89.435Å c: 101.311Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.198 0.195 0.25
Expression system: Escherichia coli

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