› 8q4f

Electron Microscopy
3.1Å resolution

Structure of arbekacin bound Escherichia coli 70S ribosome

Released:
DOI: 10.2210/pdb8q4f/pdb
PDB entry 8q4f coloured by chain, front view.
PDB entry 8q4f coloured by chain, side view.
PDB entry 8q4f coloured by chain, top view.
Source organism: Escherichia coli
Entry authors: Majumdar S, Parajuli NP, Ge X, Emmerich A, Sanyal S
Related structures: EMD-18145

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 52-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-301804 (preferred)
Entry contents:
47 distinct polypeptide molecules
5 distinct RNA molecules
Macromolecules (52 distinct):
Large ribosomal subunit protein bL33 Chain: 0
Molecule details ›
Chain: 0
Length: 55 amino acids
Theoretical weight: 6.39 KDa
Source organism: Escherichia coli
UniProt:
  • Canonical: P0A7N9 (Residues: 1-55; Coverage: 100%)
Gene names: JW3611, b3636, rpmG
Sequence domains: Ribosomal protein L33
Large ribosomal subunit protein bL34 Chain: 1
Molecule details ›
Chain: 1
Length: 46 amino acids
Theoretical weight: 5.4 KDa
Source organism: Escherichia coli
UniProt:
  • Canonical: P0A7P5 (Residues: 1-46; Coverage: 100%)
Gene names: JW3680, b3703, rimA, rpmH, ssaF
Sequence domains: Ribosomal protein L34
Large ribosomal subunit protein bL35 Chain: 2
Large ribosomal subunit protein bL36A Chain: 3
Large ribosomal subunit protein bL31 Chain: 4
Small ribosomal subunit protein uS2 Chain: B
Small ribosomal subunit protein uS3 Chain: C
Small ribosomal subunit protein uS4 Chain: D
Small ribosomal subunit protein uS5 Chain: E
Small ribosomal subunit protein bS6 Chain: F
Small ribosomal subunit protein uS7 Chain: G
Small ribosomal subunit protein uS8 Chain: H
Small ribosomal subunit protein uS9 Chain: I
Small ribosomal subunit protein uS10 Chain: J
Small ribosomal subunit protein uS11 Chain: K
Small ribosomal subunit protein uS12 Chain: L
Small ribosomal subunit protein uS13 Chain: M
Small ribosomal subunit protein uS14 Chain: N
Small ribosomal subunit protein uS15 Chain: O
Small ribosomal subunit protein bS16 Chain: P
Small ribosomal subunit protein uS17 Chain: Q
Small ribosomal subunit protein bS18 Chain: R
Small ribosomal subunit protein uS19 Chain: S
Small ribosomal subunit protein bS20 Chain: T
Small ribosomal subunit protein bS21 Chain: U
Large ribosomal subunit protein uL2 Chain: c
Large ribosomal subunit protein uL3 Chain: d
Large ribosomal subunit protein uL4 Chain: e
Large ribosomal subunit protein uL5 Chain: f
Large ribosomal subunit protein uL6 Chain: g
Large ribosomal subunit protein uL13 Chain: i
Large ribosomal subunit protein uL14 Chain: j
Large ribosomal subunit protein uL15 Chain: k
Large ribosomal subunit protein uL16 Chain: l
Large ribosomal subunit protein bL17 Chain: m
Large ribosomal subunit protein uL18 Chain: n
Large ribosomal subunit protein bL19 Chain: o
Large ribosomal subunit protein bL20 Chain: p
Large ribosomal subunit protein bL21 Chain: q
Large ribosomal subunit protein uL23 Chain: s
Large ribosomal subunit protein uL24 Chain: t
Large ribosomal subunit protein bL25 Chain: u
Large ribosomal subunit protein bL27 Chain: v
Large ribosomal subunit protein bL28 Chain: w
Large ribosomal subunit protein uL29 Chain: x
Large ribosomal subunit protein uL30 Chain: y
Large ribosomal subunit protein bL32 Chain: z
16S ribosomal RNA Chain: A
Messenger RNA Chain: X
tRNA-fMet Chain: Z
23S ribosomal RNA Chain: a
5S ribosomal RNA Chain: b

Ligands and Environments

1 bound ligand:
Ligand 84G 2 x 84G
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this EM entry.
Resolution: 3.1Å
Relevant EMDB volumes: EMD-18145

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