› 8q9x

X-ray diffraction
1.05Å resolution

The structure of thiocyanate dehydrogenase from Pelomicrobium methylotrophicum with molecular oxygen at 1.05 A resolution

Released:
DOI: 10.2210/pdb8q9x/pdb
Model geometry
Fit model/data
PDB entry 8q9x coloured by chain, front view.
PDB entry 8q9x coloured by chain, side view.
PDB entry 8q9x coloured by chain, top view.
Source organism: Pelomicrobium methylotrophicum
Primary publication:
Molecular mechanism of thiocyanate dehydrogenase at atomic resolution.
Varfolomeeva LA, Shipkov NS, Dergousova NI, Boyko KM, Khrenova MG, Tikhonova TV, Popov VO
Int J Biol Macromol 279 135058 (2024)
PMID: 39191340

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-228417 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Twin-arginine translocation signal domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 489 amino acids
Theoretical weight: 54.09 KDa
Source organism: Pelomicrobium methylotrophicum
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A5C7ETD9 (Residues: 46-513; Coverage: 91%)
Gene name: FR698_09980

Ligands and Environments

3 bound ligands:
Ligand GOL 3 x GOL
Ligand OXY 1 x OXY
Ligand CU 8 x CU
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: P212121
Unit cell:
a: 66.84Å b: 96.57Å c: 147.45Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.109 0.108 0.126
Expression system: Escherichia coli

Quick links