› 8wwz

X-ray diffraction
2.3Å resolution

Crystal structure of Bacillus subtilis glyceraldehyde-3-phosphate dehydrogenase GapB

Released:
DOI: 10.2210/pdb8wwz/pdb
Model geometry
Fit model/data
PDB entry 8wwz coloured by chain, front view.
PDB entry 8wwz coloured by chain, side view.
PDB entry 8wwz coloured by chain, top view.
Source organism: Bacillus subtilis subsp. subtilis str. 168
Primary publication:
Crystal structure of Bacillus subtilis glyceraldehyde-3-phosphate dehydrogenase GapB
Dahal P, Pathak D, Kwon E
Biodesign 11 59-65 (2023)

Function and Biology Details

Reaction catalysed: 
D-glyceraldehyde 3-phosphate + phosphate + NAD(P)(+) = 3-phospho-D-glyceroyl phosphate + NAD(P)H
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-271656 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glyceraldehyde-3-phosphate dehydrogenase 2 Chain: A
Molecule details ›
Chain: A
Length: 342 amino acids
Theoretical weight: 37.67 KDa
Source organism: Bacillus subtilis subsp. subtilis str. 168
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: O34425 (Residues: 1-340; Coverage: 100%)
Gene names: BSU29020, gapB
Sequence domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: PAL/PLS BEAMLINE 11C
Spacegroup: P6222
Unit cell:
a: 102.6Å b: 102.6Å c: 111.081Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.196 0.194 0.251
Expression system: Escherichia coli BL21(DE3)

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