› 8zaf

X-ray diffraction
1.96Å resolution

Crystal structure of SkABA3 from Shimazuella kribbensis

Released:
DOI: 10.2210/pdb8zaf/pdb
Model geometry
Fit model/data
PDB entry 8zaf coloured by chain, front view.
PDB entry 8zaf coloured by chain, side view.
PDB entry 8zaf coloured by chain, top view.
Source organism: Shimazuella kribbensis
Primary publication:
Molecular insights into a distinct class of terpenoid cyclases.
Li S, Huang JW, Min J, Li H, Ning M, Zhou S, Yang Y, Chen CC, Guo RT
Nat Commun 16 207 (2025)
PMID: 39747870

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-282436 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Sesquiterpene synthases Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 403 amino acids
Theoretical weight: 46.86 KDa
Source organism: Shimazuella kribbensis
Expression system: Escherichia coli BL21(DE3)

Ligands and Environments

2 bound ligands:
Ligand ZN 3 x ZN
Ligand SO4 4 x SO4
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: NSRRC BEAMLINE TPS 05A
Spacegroup: C2
Unit cell:
a: 220.216Å b: 107.8Å c: 81.529Å
α: 90° β: 103.65° γ: 90°
R-values:
R R work R free
0.197 0.196 0.223
Expression system: Escherichia coli BL21(DE3)

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