Filter By
Current Database
Current status
Sample type
Organism
- Homo sapiens [11188]
- Mus musculus [2179]
- Synthetic construct [2074]
- Escherichia coli [2026]
- Severe acute respiratory syndrome coronavirus [1899]
- Saccharomyces cerevisiae [1877]
- Bos taurus [885]
- Rattus norvegicus [784]
- Human immunodeficiency virus 1 [735]
- Escherichia coli [722]
- Oryctolagus cuniculus [637]
- Saccharomyces cerevisiae [632]
- Xenopus laevis [617]
- Sus scrofa [515]
- Chlamydomonas reinhardtii [298]
- Lama glama [289]
- Macaca mulatta [258]
- Arabidopsis thaliana [250]
- Drosophila melanogaster [213]
- Mycolicibacterium smegmatis [191]
- Gallus gallus [188]
- Enterobacteria phage m13 [163]
- Tetrahymena thermophila [161]
- Chaetomium thermophilum [148]
- Danio rerio [138]
- Pseudomonas aeruginosa [114]
- Thermus thermophilus [114]
- Influenza a virus [113]
- Mycobacterium tuberculosis [112]
- Bacillus subtilis [108]
- Salmonella enterica [107]
- (no species) [102]
- Enterobacteria phage t4 [102]
- Escherichia virus t7 [102]
- Ovis aries [98]
- Vicugna pacos [97]
- Schizosaccharomyces pombe [95]
- Chaetomium thermophilum [93]
- Bacillus subtilis [91]
- Escherichia coli [90]
- Plasmodium falciparum [90]
- Staphylococcus aureus [88]
- Bacillus sp. (strain ps3) [82]
- Severe acute respiratory syndrome coronavirus [82]
- Caenorhabditis elegans [80]
- Pseudomonas aeruginosa [78]
- Mycobacterium tuberculosis [73]
- Vibrio cholerae [72]
- Thermus thermophilus [68]
- Hepatitis b virus [67]
- Plasmodium falciparum [65]
- Human cytomegalovirus [60]
- Mycoplasma pneumoniae [60]
- Thermoplasma acidophilum [59]
- Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [58]
- Human immunodeficiency virus [58]
- Spinacia oleracea [58]
- Polytomella sp. pringsheim 198.80 [57]
- Trypanosoma brucei [53]
- Canis lupus [53]
- Sus scrofa [53]
- Zaire ebolavirus [52]
- Chikungunya virus [52]
- Neurospora crassa [52]
- Escherichia coli [52]
- Legionella pneumophila [51]
- Severe acute respiratory syndrome coronavirus [50]
- Equus caballus [49]
- Synechocystis sp. pcc 6803 [48]
- Parengyodontium album [48]
- Porphyridium purpureum [47]
- Amanita phalloides [46]
- Eastern equine encephalitis virus [45]
- Middle east respiratory syndrome-related coronavirus [45]
- Salmonella phage p22 [44]
- Enterovirus c [44]
- Yarrowia lipolytica [44]
- Mycolicibacterium smegmatis [43]
- Enterovirus d [43]
- Severe acute respiratory syndrome coronavirus [43]
- Pseudomonas phage phi6 [42]
- Zika virus [41]
- Euglena gracilis [40]
- Enterovirus a [40]
- Brome mosaic virus [39]
- Streptococcus pyogenes [39]
- Cypovirus 1 [38]
- Komagataella phaffii [38]
- Cricetulus griseus [37]
- Helicobacter pylori [37]
- Myxococcus xanthus [37]
- Enterovirus a [37]
- (no species) [36]
- Human herpesvirus 1 [36]
- Foot-and-mouth disease virus [35]
- Adeno-associated virus [35]
- Saccharomyces cerevisiae [35]
- Phomopsis amygdali [34]
- Saccharomyces cerevisiae [34]
- Porcine epidemic diarrhea virus [34]
EM Method
Resolution
Model molecular weight
Release Date
Author by name
- Suppressed [3928]
- Ward AB [1290]
- Zhang X [1116]
- Zhang Y [1088]
- Liu J [1057]
- Wang Y [933]
- Ren G [892]
- Wang X [856]
- Li S [668]
- Li Y [652]
- Zhang Z [632]
- Li Z [621]
- Zhang J [613]
- Zhang M [597]
- Wang J [557]
- Gao Y [545]
- Li X [543]
- Wang L [536]
- Liu Y [530]
- Zhang L [529]
- Li J [483]
- Beckmann R [476]
- Chiu W [460]
- Li H [447]
- Zhou ZH [443]
- Cottrell CA [432]
- Burton DR [426]
- Wang H [423]
- Shi Y [419]
- Wang C [414]
- Liu H [410]
- Zhou L [407]
- Chen Y [404]
- Liu C [404]
- Liu X [401]
- Xu Y [392]
- Liu S [387]
- Carragher B [385]
- Potter CS [385]
- Zhang K [384]
- Chen Z [382]
- Zhu Y [380]
- Liu JF [377]
- Wilson IA [377]
- Wang Q [375]
- Li W [369]
- Baumeister W [364]
- Liu L [362]
- Wang Z [362]
- Zhang S [360]
- Chen X [358]
- Yu X [351]
- Kotecha A [349]
- Scheres SHW [348]
- Li D [345]
- Berninghausen O [338]
- Cramer P [333]
- Torres JL [333]
- Cheng J [332]
- Huang Y [331]
- Liu Z [329]
- Ozorowski G [323]
- Chen J [322]
- Yang X [321]
- Turner HL [320]
- Sanders RW [317]
- Jiang Y [310]
- Zhang C [310]
- Cheng Y [301]
- Lyumkis D [300]
- Rubinstein JL [300]
- Sewall LM [300]
- Kwong PD [298]
- Nogales E [298]
- Yang Y [296]
- Skiniotis G [294]
- Gao N [291]
- Zhang H [290]
- Sun Y [282]
- Acharya P [281]
- Lei D [277]
- Yu Z [277]
- Zhu X [277]
- Zhou Q [276]
- Frank J [275]
- Wang M [273]
- Wu J [271]
- Wang P [270]
- Zhang P [269]
- Zhang Q [267]
- Xu J [266]
- Wang F [258]
- Zhang B [258]
- Zhao Y [258]
- Bustamante C [257]
- Wang W [256]
- Zhou Y [254]
- Li N [252]
- Han J [251]
- Subramaniam S [251]
Author by ORCID
- Ward AB [648]
- Ren G [567]
- Liu J [383]
- Torres JL [275]
- Skiniotis G [261]
- Gao N [239]
- Cheng Y [227]
- Kotecha A [219]
- Zhou ZH [215]
- Ozorowski G [215]
- Beckmann R [210]
- Scheres SHW [209]
- Cottrell CA [209]
- Rubinstein JL [196]
- Kobilka BK [195]
- Subramaniam S [195]
- Williamson JR [184]
- Raunser S [183]
- Amunts A [182]
- Vanden Broeck A [178]
- Lyumkis D [177]
- Klinge S [175]
- Papasergi-scott MM [173]
- Gmeiner P [171]
- Borgnia MJ [170]
- Cramer P [169]
- Crispin M [169]
- Baker D [167]
- Burton DR [165]
- Chiu W [164]
- Hilger D [162]
- Schmid MF [162]
- Plitzko JM [161]
- Perez-hernandez G [160]
- Van Gils Mj [160]
- Plevka P [159]
- Kuhlbrandt W [158]
- Seven AB [157]
- Acharya P [156]
- Panova O [156]
- Eskici G [156]
- Batebi H [155]
- Hildebrand PW [155]
- Brown A [147]
- Li H [145]
- Gui M [145]
- Copps J [144]
- Huiskonen JT [143]
- Cheng J [142]
- Mao Y [141]
- Schulman BA [140]
- Bai XC [140]
- Xu HE [140]
- Allen JD [138]
- Edwards RJ [137]
- Beck M [134]
- White MA [133]
- Wilson DN [133]
- Briggs JAG [132]
- Zhou L [131]
- Castro CE [131]
- Marras AE [131]
- Carragher B [131]
- Mahamid J [129]
- Kikkawa M [129]
- Li N [126]
- Ludtke SJ [126]
- Robinson CV [125]
- Stahlberg H [124]
- Grigorieff N [124]
- Walker JE [122]
- Ranson NA [121]
- Montgomery MG [120]
- Egelman EH [118]
- Tan YZ [117]
- Schoehn G [116]
- Zhou L [116]
- Sanders RW [116]
- Pilhofer M [116]
- Gao GF [116]
- Goedert M [116]
- Cui Y [116]
- Xiang Y [116]
- Xia N [115]
- Greber BJ [114]
- Engel BD [113]
- Moeller A [113]
- Lander GC [112]
- Hummer G [111]
- Schmitz AJ [111]
- Mills DJ [111]
- Yang M [110]
- Murata K [109]
- Spikes TE [109]
- Nogales E [108]
- Nureki O [108]
- Sui SF [107]
- Rappsilber J [107]
- Hurt E [106]
- Veesler D [106]
Journal
- NAT COMMUN [5266]
- NATURE [3246]
- TO BE PUBLISHED [2820]
- PNAS [2288]
- SCIENCE [2050]
- NAT STRUCT MOL BIOL [1899]
- CELL [1700]
- ELIFE [1627]
- BIORXIV [1340]
- MOL CELL [1282]
- SCI ADV [1048]
- STRUCTURE [1015]
- CELL REP [833]
- J MOL BIOL [598]
- J VIROL [545]
- NUCLEIC ACIDS RES [515]
- EMBO J [498]
- CELL RES [429]
- PLOS PATHOG [392]
- J BIOL CHEM [373]
- COMMUN BIOL [372]
- NAT MICROBIOL [338]
- J STRUCT BIOL [305]
- SCI REP [297]
- NAT CHEM BIOL [284]
- CELL DISCOV [267]
- NAT METHODS [241]
- CELL HOST MICROBE [173]
- J CELL BIOL [162]
- IMMUNITY [159]
- EMBO REP [158]
- MBIO [156]
- NAT PLANTS [151]
- PLOS BIOL [149]
- ACTA CRYSTALLOGR D STRUCT BIOL [130]
- PROTEIN CELL [119]
- PLOS ONE [104]
- VIRUSES [101]
- IUCRJ [100]
- SCI TRANSL MED [89]
- NEURON [83]
- J AM CHEM SOC [81]
- MOL BIOL CELL [72]
- ISCIENCE [71]
- INT J MOL SCI [67]
- J STRUCT BIOL X [62]
- LIFE SCI ALLIANCE [59]
- BIOCHEMISTRY [57]
- FRONT ENDOCRINOL [52]
- PNAS NEXUS [52]
- PROTEIN SCI [51]
- NPJ VACCINES [49]
- DEV CELL [47]
- ACS NANO [46]
- FRONT MOL BIOSCI [45]
- VIROLOGY [45]
- COMMUN CHEM [44]
- NAT NANOTECHNOL [42]
- SIGNAL TRANSDUCT TARGET THER [41]
- ANGEW CHEM INT ED ENGL [40]
- BLOOD [40]
- J BACTERIOL [40]
- MOL MICROBIOL [39]
- NAT CELL BIOL [39]
- ACTA NEUROPATHOL [37]
- BIOMOLECULES [37]
- CELL REP METHODS [37]
- RNA [36]
- FEBS J [34]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
- J CELL SCI [31]
- BIOCHEM J [30]
- CURR BIOL [29]
- NAT CHEM [29]
- BIOCHEM BIOPHYS RES COMMUN [28]
- NAT CATAL [27]
- EMERG MICROBES INFECT [26]
- FRONT MICROBIOL [26]
- SCI IMMUNOL [26]
- STRUCTURE (LONDON, ENGLAND : 1993) [26]
- GENES DEV [25]
- NAT MATER [24]
- OPEN BIOL [23]
- RES SQ [23]
- ACS CENT SCI [22]
- FEBS LETT [22]
- FRONT IMMUNOL [22]
- J MED CHEM [20]
- NANOSCALE [20]
- CURR RES STRUCT BIOL [19]
- ACS CHEM BIOL [18]
- NAT NEUROSCI [18]
- PLANT CELL [18]
- BIOPHYS J [17]
- NAT IMMUNOL [17]
- NAT PROTOC [17]
- BIOCHIM BIOPHYS ACTA [16]
- COMMUN MATER [16]
- MICROBIOL SPECTR [16]
- MOL PHARMACOL [16]
Software
- RELION [10484]
- CRYOSPARC [5729]
- CTFFIND [2932]
- GCTF [2213]
- IMOD [1003]
- SPIDER [797]
- CHIMERA [492]
- CISTEM [422]
- FREALIGN [410]
- EMAN [363]
- EMAN2 [332]
- WARP [330]
- DYNAMO [245]
- PEET [213]
- TOMOCTF [197]
- PHENIX [154]
- XMIPP [153]
- IMAGIC [144]
- JSPR [140]
- AUTO3DEM [124]
- SPHIRE [114]
- MATLAB [107]
- COOT [101]
- NOVACTF [99]
- CTFFIND3 [94]
- PYTOM [91]
- ETOMO [83]
- AV3 [82]
- TOMO3D [75]
- UCSF CHIMERA [73]
- CTFPHASEFLIP [69]
- IPET [64]
- SPARX [64]
- TOM TOOLBOX [62]
- EMAN2, SPARX [61]
- CRYOLO [58]
- SITUS [55]
- CTFFIND4 [49]
- TOM [49]
- EMCLARITY [47]
- MDFF [47]
- MRC [47]
- AIMLESS [46]
- BSOFT [42]
- IMAGIC, SPIDER [42]
- URO [40]
- SPIDER, APPION [39]
- PROTOMO [37]
- SPIDER, FREALIGN [37]
- IMOD, PEET [35]
- EMFIT [33]
- SIMPLE [33]
- APPION, SPIDER [32]
- CTFFIND3, RELION [31]
- APPION [30]
- IHRSR [30]
- CTFTILT [29]
- SPRING [29]
- EM3DR2 [28]
- MOTIONCORR2 [28]
- EMAN1 [27]
- STOPGAP [27]
- CHIMERA, SITUS [26]
- MPSA [26]
- IMIRS [25]
- FREALIX [24]
- O [23]
- EMAN2, RELION [22]
- J3DR [22]
- SCIPION [21]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- IMOD, TOMO3D [20]
- JALIGN [20]
- CHIMERA, MDFF [19]
- EMAN1, EMAN2 [18]
- IMOD, TOMO3D, PEET [18]
- SPIDER, RELION [18]
- SUBTOM [18]
- APPION, SPIDER, SPARX, EMAN2 [17]
- CHIMERA, COOT [17]
- MOLREP [17]
- SPIDER, IMAGIC [17]
- IMAGIC, CUSTOM, SPIDER [16]
- MULTI-PATH SA [16]
- POINTLESS [16]
- SERIALEM [16]
- UNBLUR, CTFFIND4, FREALIGN [16]
- APPION, SPIDER, EMAN [15]
- COMET [15]
- EMAN, SPIDER [15]
- IMAGIC-5 [15]
- IMOD, DYNAMO [15]
- RELION, CTFFIND3 [15]
- SPIDER, EMAN [15]
- TOMOALIGN [15]
- CHIMERA, FLEX-EM [14]
- IPET, FETR, SPIDER, IMOD, EMAN, AND, EMAN2 [14]
- SPIDER, IHRSR [14]
- DIREX [13]
- IMOD, RAPTOR, PROTOMO [13]
Microscope
- FEI TITAN KRIOS [22477]
- FEI TALOS ARCTICA [1649]
- TFS KRIOS [1616]
- FEI TECNAI F20 [1517]
- FEI POLARA 300 [1150]
- TFS GLACIOS [673]
- FEI TECNAI SPIRIT [622]
- FEI TECNAI F30 [475]
- FEI TITAN [431]
- ZEISS LIBRA120PLUS [407]
- FEI TECNAI ARCTICA [339]
- FEI TECNAI 12 [266]
- FEI TECNAI 20 [265]
- FEI/PHILIPS CM200FEG [263]
- JEOL CRYO ARM 300 [257]
- JEOL 3200FSC [198]
- JEOL 2200FS [182]
- JEOL 2010F [116]
- FEI/PHILIPS CM300FEG/T [103]
- TFS TALOS [87]
- JEOL 2100 [74]
- JEOL 2100F [73]
- JEOL 3100FFC [58]
- JEOL 3200FS [50]
- TFS TALOS F200C [50]
- FEI/PHILIPS EM420 [42]
- JEOL 1230 [42]
- JEOL CRYO ARM 200 [42]
- OTHER [42]
- FEI/PHILIPS CM120T [39]
- TFS TALOS L120C [30]
- JEOL 1400 [29]
- JEOL 3000SFF [28]
- FEI/PHILIPS CM200FEG/ST [26]
- FEI/PHILIPS CM200T [26]
- JEOL 4000EX [24]
- JEOL KYOTO-3000SFF [24]
- JEOL 1200EXII [23]
- JEOL 2200FSC [19]
- JEOL 4000 [17]
- JEOL 1200EX [15]
- JEOL 1400/HR + YPS FEG [11]
- FEI/PHILIPS CM200FEG/UT [10]
- FEI/PHILIPS CM12 [8]
- FEI/PHILIPS CM300FEG/HE [8]
- JEOL 2010 [8]
- FEI TECNAI 10 [7]
- FEI/PHILIPS CM300FEG/ST [7]
- JEOL 100CX [7]
- JEOL 3100FEF [7]
- JEOL 2000EX [6]
- TFS TUNDRA [5]
- HITACHI H3000 UHVEM [4]
- JEOL 1010 [4]
- FEI TECNAI SPHERA [3]
- FEI/PHILIPS CM10 [3]
- HITACHI EF2000 [3]
- HITACHI H-9500SD [3]
- JEOL 1000EES [3]
- JEOL 1200 [3]
- FEI/PHILIPS EM400 [2]
- JEOL 2010HC [2]
- JEOL 2010HT [2]
- JEOL 2010UHR [2]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- HITACHI H7600 [1]
- JEOL 2000EXII [1]
- JEOL 2011 [1]
- ZEISS LEO912 [1]
Electron Source
Film or detector model
- GATAN K2 SUMMIT (4K X 4K) [9332]
- GATAN K3 (6K X 4K) [6758]
- GATAN K3 BIOQUANTUM (6K X 4K) [4934]
- FEI FALCON III (4K X 4K) [2221]
- GATAN K2 QUANTUM (4K X 4K) [1811]
- FEI FALCON IV (4K X 4K) [1529]
- FEI FALCON II (4K X 4K) [1421]
- GATAN ULTRASCAN 4000 (4K X 4K) [1171]
- KODAK SO-163 FILM [1076]
- TVIPS TEMCAM-F416 (4K X 4K) [798]
- FEI EAGLE (4K X 4K) [375]
- OTHER [323]
- GATAN K2 (4K X 4K) [232]
- FEI CETA (4K X 4K) [219]
- TVIPS TEMCAM-F415 (4K X 4K) [169]
- GATAN K2 BASE (4K X 4K) [162]
- DIRECT ELECTRON DE-20 (5K X 3K) [141]
- GENERIC CCD [113]
- GENERIC GATAN (4K X 4K) [111]
- GATAN ULTRASCAN 1000 (2K X 2K) [110]
- GENERIC TVIPS (4K X 4K) [77]
- FEI FALCON I (4K X 4K) [63]
- TFS FALCON 4I (4K X 4K) [63]
- FEI EAGLE (2K X 2K) [61]
- GATAN MULTISCAN [55]
- GENERIC GATAN [53]
- TVIPS TEMCAM-F816 (8K X 8K) [49]
- DIRECT ELECTRON DE-64 (8K X 8K) [44]
- TVIPS TEMCAM-F224 (2K X 2K) [37]
- DIRECT ELECTRON DE-12 (4K X 3K) [33]
- DIRECT ELECTRON DE-16 (4K X 4K) [33]
- GATAN K2 IS (4K X 4K) [25]
- TVIPS TEMCAM-F216 (2K X 2K) [20]
- GENERIC GATAN (2K X 2K) [17]
- KODAK 4489 FILM [14]
- DIRECT ELECTRON DE-10 (5K X 4K) [13]
- AGFA SCIENTA FILM [12]
- DECTRIS SINGLA (1K X 1K) [11]
- DIRECT ELECTRON APOLLO (4K X 4K) [11]
- GATAN ORIUS SC200 (2K X 2K) [11]
- GENERIC CCD (2K X 2K) [11]
- GENERIC FILM [11]
- GENERIC TVIPS [11]
- GATAN ORIUS SC1000 (4K X 2.7K) [7]
- GATAN ULTRASCAN 10000 (10K X 10K) [6]
- SIA 15C (3K X 3K) [4]
- GENERIC IMAGE PLATES [3]
- GENERIC TVIPS (2K X 2K) [3]
- DECTRIS ELA (1K X 0.5K) [2]
- GATAN ORIUS SC600 (2.7K X 2.7K) [2]
- PROSCAN TEM-PIV (2K X 2K) [1]
EMPIAR Experiment type
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [1132]
- MICROGRAPHS - SINGLE FRAME [371]
- TILT SERIES [180]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [75]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [62]
- RECONSTRUCTED VOLUMES [55]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [19]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [17]
- CLASS AVERAGES [14]
- SUBTOMOGRAMS [6]
- DIFFRACTION IMAGES [3]
- PARTICLE PICKING [3]
- STITCHED MAPS [3]
- ALIGNED MOVIE FRAMES (.MRCS EXTENSION), ALIGNED-AVERAGED MICROGRAPHS (.MRC EXTENSION) AND PARTICLE COORDINATES (.BOX EXTENSION) [1]
- MICROGRAPHS - FOCAL PAIRS - CONTRAST INVERTED [1]
- MICROGRAPHS - FOCAL PAIRS - UNPROCESSED [1]
- MODEL [1]
- SOFT X-RAY TOMOGRAMS [1]
SJ25C1 Fab in complex with soluble CD19
He C, Mansilla-Soto J, Khanra N, Hamieh M, Bustos V, Paquette AJ, Garcia Angus A, Shore DM, Rice WJ, Khelashvili G, Sadelain M, Meyerson JR
Science immunology (2023) 8 [ Pubmed: 36867678 DOI: 10.1126/sciimmunol.adf1426 ]
Image sets:
Cryo-EM structure of the human GBP1 dimer bound to GDP-AlF3
Kuhm TI, de Agrela Pinto C, Huber ST, Taisne C, Gross L, Giannopoulou G, Pardon E, Steyaert J, Tans S, Jakobi AJ
To Be Published
Image sets:
Single particle cryo-EM structure of 14-aa-GS-RIG-I in complex with p3SLR30
To Be Published
Image sets:
Ex vivo murine AApoAII amyloid fibril
Andreotti G, Baur J, Ugrina M, Pfeiffer PB, Hartmann M, Wiese S, Miyahara H, Higuchi K, Schwierz N, Schmidt M, Fändrich M
J Mol Biol (2024) 436 [ Pubmed: 38199491 DOI: 10.1016/j.jmb.2024.168441 ]
Image sets:
Unseeded Aβ(1-40) amyloid fibrils
Seeded Aβ(1-40) amyloid fibril
bioRxiv (2023) [ DOI: 10.1101/2023.05.31.542975 ]
Image sets:
- Image tilt-series of ribosomes extracted from EMPIAR-10499 at intramolecular scale, small box, large pixel
- Image tilt-series subtomograms of ribosomes extracted from EMPIAR-10499 at intermolecular scale
- Image tilt-series subtomograms of ribosomes extracted from EMPIAR-10499 at intramolecular scale, medium box, small pixel
- Volumetric subtomograms of ribosomes extracted from EMPIAR-10499 at intramolecular scale
- Image tilt-series subtomograms of ribosomes extracted from EMPIAR-10499 at intramolecular scale, large box, small pixel
- Volumetric subtomograms of ribosome•SecDF complex extracted from EMPIAR-10499 at intramolecular scale
Cryo-EM of HCoV-NL63 5' proximal stem-loop 5
Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R
bioRxiv (2023) [ DOI: 10.1101/2023.11.22.567964 ]
Image sets:
Photorhabdus luminescens TcdA1 prepore-to-pore intermediate, K1179W mutant
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8cpz
Q-score: 0.526
Nganga PN, Folz J, Kucher S, Roderer D, Xu Y, Sitsel O, Belyy A, Prumbaum D, Assafa TE, Kuehnemuth R, Dong M, Seidel C, Bordignon E, Raunser S
To Be Published
- Tcda1 (285 kDa, Protein from Photorhabdus luminescens)
- Tcda1 (1 MDa, Complex from Photorhabdus luminescens)
Filter By
Current Database
Current status
Sample type
Organism
- Homo sapiens [11188]
- Mus musculus [2179]
- Synthetic construct [2074]
- Escherichia coli [2026]
- Severe acute respiratory syndrome coronavirus [1899]
- Saccharomyces cerevisiae [1877]
- Bos taurus [885]
- Rattus norvegicus [784]
- Human immunodeficiency virus 1 [735]
- Escherichia coli [722]
- Oryctolagus cuniculus [637]
- Saccharomyces cerevisiae [632]
- Xenopus laevis [617]
- Sus scrofa [515]
- Chlamydomonas reinhardtii [298]
- Lama glama [289]
- Macaca mulatta [258]
- Arabidopsis thaliana [250]
- Drosophila melanogaster [213]
- Mycolicibacterium smegmatis [191]
- Gallus gallus [188]
- Enterobacteria phage m13 [163]
- Tetrahymena thermophila [161]
- Chaetomium thermophilum [148]
- Danio rerio [138]
- Pseudomonas aeruginosa [114]
- Thermus thermophilus [114]
- Influenza a virus [113]
- Mycobacterium tuberculosis [112]
- Bacillus subtilis [108]
- Salmonella enterica [107]
- (no species) [102]
- Enterobacteria phage t4 [102]
- Escherichia virus t7 [102]
- Ovis aries [98]
- Vicugna pacos [97]
- Schizosaccharomyces pombe [95]
- Chaetomium thermophilum [93]
- Bacillus subtilis [91]
- Escherichia coli [90]
- Plasmodium falciparum [90]
- Staphylococcus aureus [88]
- Bacillus sp. (strain ps3) [82]
- Severe acute respiratory syndrome coronavirus [82]
- Caenorhabditis elegans [80]
- Pseudomonas aeruginosa [78]
- Mycobacterium tuberculosis [73]
- Vibrio cholerae [72]
- Thermus thermophilus [68]
- Hepatitis b virus [67]
- Plasmodium falciparum [65]
- Human cytomegalovirus [60]
- Mycoplasma pneumoniae [60]
- Thermoplasma acidophilum [59]
- Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [58]
- Human immunodeficiency virus [58]
- Spinacia oleracea [58]
- Polytomella sp. pringsheim 198.80 [57]
- Trypanosoma brucei [53]
- Canis lupus [53]
- Sus scrofa [53]
- Zaire ebolavirus [52]
- Chikungunya virus [52]
- Neurospora crassa [52]
- Escherichia coli [52]
- Legionella pneumophila [51]
- Severe acute respiratory syndrome coronavirus [50]
- Equus caballus [49]
- Synechocystis sp. pcc 6803 [48]
- Parengyodontium album [48]
- Porphyridium purpureum [47]
- Amanita phalloides [46]
- Eastern equine encephalitis virus [45]
- Middle east respiratory syndrome-related coronavirus [45]
- Salmonella phage p22 [44]
- Enterovirus c [44]
- Yarrowia lipolytica [44]
- Mycolicibacterium smegmatis [43]
- Enterovirus d [43]
- Severe acute respiratory syndrome coronavirus [43]
- Pseudomonas phage phi6 [42]
- Zika virus [41]
- Euglena gracilis [40]
- Enterovirus a [40]
- Brome mosaic virus [39]
- Streptococcus pyogenes [39]
- Cypovirus 1 [38]
- Komagataella phaffii [38]
- Cricetulus griseus [37]
- Helicobacter pylori [37]
- Myxococcus xanthus [37]
- Enterovirus a [37]
- (no species) [36]
- Human herpesvirus 1 [36]
- Foot-and-mouth disease virus [35]
- Adeno-associated virus [35]
- Saccharomyces cerevisiae [35]
- Phomopsis amygdali [34]
- Saccharomyces cerevisiae [34]
- Porcine epidemic diarrhea virus [34]
EM Method
Resolution
Model molecular weight
Release Date
Author by name
- Suppressed [3928]
- Ward AB [1290]
- Zhang X [1116]
- Zhang Y [1088]
- Liu J [1057]
- Wang Y [933]
- Ren G [892]
- Wang X [856]
- Li S [668]
- Li Y [652]
- Zhang Z [632]
- Li Z [621]
- Zhang J [613]
- Zhang M [597]
- Wang J [557]
- Gao Y [545]
- Li X [543]
- Wang L [536]
- Liu Y [530]
- Zhang L [529]
- Li J [483]
- Beckmann R [476]
- Chiu W [460]
- Li H [447]
- Zhou ZH [443]
- Cottrell CA [432]
- Burton DR [426]
- Wang H [423]
- Shi Y [419]
- Wang C [414]
- Liu H [410]
- Zhou L [407]
- Chen Y [404]
- Liu C [404]
- Liu X [401]
- Xu Y [392]
- Liu S [387]
- Carragher B [385]
- Potter CS [385]
- Zhang K [384]
- Chen Z [382]
- Zhu Y [380]
- Liu JF [377]
- Wilson IA [377]
- Wang Q [375]
- Li W [369]
- Baumeister W [364]
- Liu L [362]
- Wang Z [362]
- Zhang S [360]
- Chen X [358]
- Yu X [351]
- Kotecha A [349]
- Scheres SHW [348]
- Li D [345]
- Berninghausen O [338]
- Cramer P [333]
- Torres JL [333]
- Cheng J [332]
- Huang Y [331]
- Liu Z [329]
- Ozorowski G [323]
- Chen J [322]
- Yang X [321]
- Turner HL [320]
- Sanders RW [317]
- Jiang Y [310]
- Zhang C [310]
- Cheng Y [301]
- Lyumkis D [300]
- Rubinstein JL [300]
- Sewall LM [300]
- Kwong PD [298]
- Nogales E [298]
- Yang Y [296]
- Skiniotis G [294]
- Gao N [291]
- Zhang H [290]
- Sun Y [282]
- Acharya P [281]
- Lei D [277]
- Yu Z [277]
- Zhu X [277]
- Zhou Q [276]
- Frank J [275]
- Wang M [273]
- Wu J [271]
- Wang P [270]
- Zhang P [269]
- Zhang Q [267]
- Xu J [266]
- Wang F [258]
- Zhang B [258]
- Zhao Y [258]
- Bustamante C [257]
- Wang W [256]
- Zhou Y [254]
- Li N [252]
- Han J [251]
- Subramaniam S [251]
Author by ORCID
- Ward AB [648]
- Ren G [567]
- Liu J [383]
- Torres JL [275]
- Skiniotis G [261]
- Gao N [239]
- Cheng Y [227]
- Kotecha A [219]
- Zhou ZH [215]
- Ozorowski G [215]
- Beckmann R [210]
- Scheres SHW [209]
- Cottrell CA [209]
- Rubinstein JL [196]
- Kobilka BK [195]
- Subramaniam S [195]
- Williamson JR [184]
- Raunser S [183]
- Amunts A [182]
- Vanden Broeck A [178]
- Lyumkis D [177]
- Klinge S [175]
- Papasergi-scott MM [173]
- Gmeiner P [171]
- Borgnia MJ [170]
- Cramer P [169]
- Crispin M [169]
- Baker D [167]
- Burton DR [165]
- Chiu W [164]
- Hilger D [162]
- Schmid MF [162]
- Plitzko JM [161]
- Perez-hernandez G [160]
- Van Gils Mj [160]
- Plevka P [159]
- Kuhlbrandt W [158]
- Seven AB [157]
- Acharya P [156]
- Panova O [156]
- Eskici G [156]
- Batebi H [155]
- Hildebrand PW [155]
- Brown A [147]
- Li H [145]
- Gui M [145]
- Copps J [144]
- Huiskonen JT [143]
- Cheng J [142]
- Mao Y [141]
- Schulman BA [140]
- Bai XC [140]
- Xu HE [140]
- Allen JD [138]
- Edwards RJ [137]
- Beck M [134]
- White MA [133]
- Wilson DN [133]
- Briggs JAG [132]
- Zhou L [131]
- Castro CE [131]
- Marras AE [131]
- Carragher B [131]
- Mahamid J [129]
- Kikkawa M [129]
- Li N [126]
- Ludtke SJ [126]
- Robinson CV [125]
- Stahlberg H [124]
- Grigorieff N [124]
- Walker JE [122]
- Ranson NA [121]
- Montgomery MG [120]
- Egelman EH [118]
- Tan YZ [117]
- Schoehn G [116]
- Zhou L [116]
- Sanders RW [116]
- Pilhofer M [116]
- Gao GF [116]
- Goedert M [116]
- Cui Y [116]
- Xiang Y [116]
- Xia N [115]
- Greber BJ [114]
- Engel BD [113]
- Moeller A [113]
- Lander GC [112]
- Hummer G [111]
- Schmitz AJ [111]
- Mills DJ [111]
- Yang M [110]
- Murata K [109]
- Spikes TE [109]
- Nogales E [108]
- Nureki O [108]
- Sui SF [107]
- Rappsilber J [107]
- Hurt E [106]
- Veesler D [106]
Journal
- NAT COMMUN [5266]
- NATURE [3246]
- TO BE PUBLISHED [2820]
- PNAS [2288]
- SCIENCE [2050]
- NAT STRUCT MOL BIOL [1899]
- CELL [1700]
- ELIFE [1627]
- BIORXIV [1340]
- MOL CELL [1282]
- SCI ADV [1048]
- STRUCTURE [1015]
- CELL REP [833]
- J MOL BIOL [598]
- J VIROL [545]
- NUCLEIC ACIDS RES [515]
- EMBO J [498]
- CELL RES [429]
- PLOS PATHOG [392]
- J BIOL CHEM [373]
- COMMUN BIOL [372]
- NAT MICROBIOL [338]
- J STRUCT BIOL [305]
- SCI REP [297]
- NAT CHEM BIOL [284]
- CELL DISCOV [267]
- NAT METHODS [241]
- CELL HOST MICROBE [173]
- J CELL BIOL [162]
- IMMUNITY [159]
- EMBO REP [158]
- MBIO [156]
- NAT PLANTS [151]
- PLOS BIOL [149]
- ACTA CRYSTALLOGR D STRUCT BIOL [130]
- PROTEIN CELL [119]
- PLOS ONE [104]
- VIRUSES [101]
- IUCRJ [100]
- SCI TRANSL MED [89]
- NEURON [83]
- J AM CHEM SOC [81]
- MOL BIOL CELL [72]
- ISCIENCE [71]
- INT J MOL SCI [67]
- J STRUCT BIOL X [62]
- LIFE SCI ALLIANCE [59]
- BIOCHEMISTRY [57]
- FRONT ENDOCRINOL [52]
- PNAS NEXUS [52]
- PROTEIN SCI [51]
- NPJ VACCINES [49]
- DEV CELL [47]
- ACS NANO [46]
- FRONT MOL BIOSCI [45]
- VIROLOGY [45]
- COMMUN CHEM [44]
- NAT NANOTECHNOL [42]
- SIGNAL TRANSDUCT TARGET THER [41]
- ANGEW CHEM INT ED ENGL [40]
- BLOOD [40]
- J BACTERIOL [40]
- MOL MICROBIOL [39]
- NAT CELL BIOL [39]
- ACTA NEUROPATHOL [37]
- BIOMOLECULES [37]
- CELL REP METHODS [37]
- RNA [36]
- FEBS J [34]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
- J CELL SCI [31]
- BIOCHEM J [30]
- CURR BIOL [29]
- NAT CHEM [29]
- BIOCHEM BIOPHYS RES COMMUN [28]
- NAT CATAL [27]
- EMERG MICROBES INFECT [26]
- FRONT MICROBIOL [26]
- SCI IMMUNOL [26]
- STRUCTURE (LONDON, ENGLAND : 1993) [26]
- GENES DEV [25]
- NAT MATER [24]
- OPEN BIOL [23]
- RES SQ [23]
- ACS CENT SCI [22]
- FEBS LETT [22]
- FRONT IMMUNOL [22]
- J MED CHEM [20]
- NANOSCALE [20]
- CURR RES STRUCT BIOL [19]
- ACS CHEM BIOL [18]
- NAT NEUROSCI [18]
- PLANT CELL [18]
- BIOPHYS J [17]
- NAT IMMUNOL [17]
- NAT PROTOC [17]
- BIOCHIM BIOPHYS ACTA [16]
- COMMUN MATER [16]
- MICROBIOL SPECTR [16]
- MOL PHARMACOL [16]
Software
- RELION [10484]
- CRYOSPARC [5729]
- CTFFIND [2932]
- GCTF [2213]
- IMOD [1003]
- SPIDER [797]
- CHIMERA [492]
- CISTEM [422]
- FREALIGN [410]
- EMAN [363]
- EMAN2 [332]
- WARP [330]
- DYNAMO [245]
- PEET [213]
- TOMOCTF [197]
- PHENIX [154]
- XMIPP [153]
- IMAGIC [144]
- JSPR [140]
- AUTO3DEM [124]
- SPHIRE [114]
- MATLAB [107]
- COOT [101]
- NOVACTF [99]
- CTFFIND3 [94]
- PYTOM [91]
- ETOMO [83]
- AV3 [82]
- TOMO3D [75]
- UCSF CHIMERA [73]
- CTFPHASEFLIP [69]
- IPET [64]
- SPARX [64]
- TOM TOOLBOX [62]
- EMAN2, SPARX [61]
- CRYOLO [58]
- SITUS [55]
- CTFFIND4 [49]
- TOM [49]
- EMCLARITY [47]
- MDFF [47]
- MRC [47]
- AIMLESS [46]
- BSOFT [42]
- IMAGIC, SPIDER [42]
- URO [40]
- SPIDER, APPION [39]
- PROTOMO [37]
- SPIDER, FREALIGN [37]
- IMOD, PEET [35]
- EMFIT [33]
- SIMPLE [33]
- APPION, SPIDER [32]
- CTFFIND3, RELION [31]
- APPION [30]
- IHRSR [30]
- CTFTILT [29]
- SPRING [29]
- EM3DR2 [28]
- MOTIONCORR2 [28]
- EMAN1 [27]
- STOPGAP [27]
- CHIMERA, SITUS [26]
- MPSA [26]
- IMIRS [25]
- FREALIX [24]
- O [23]
- EMAN2, RELION [22]
- J3DR [22]
- SCIPION [21]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- IMOD, TOMO3D [20]
- JALIGN [20]
- CHIMERA, MDFF [19]
- EMAN1, EMAN2 [18]
- IMOD, TOMO3D, PEET [18]
- SPIDER, RELION [18]
- SUBTOM [18]
- APPION, SPIDER, SPARX, EMAN2 [17]
- CHIMERA, COOT [17]
- MOLREP [17]
- SPIDER, IMAGIC [17]
- IMAGIC, CUSTOM, SPIDER [16]
- MULTI-PATH SA [16]
- POINTLESS [16]
- SERIALEM [16]
- UNBLUR, CTFFIND4, FREALIGN [16]
- APPION, SPIDER, EMAN [15]
- COMET [15]
- EMAN, SPIDER [15]
- IMAGIC-5 [15]
- IMOD, DYNAMO [15]
- RELION, CTFFIND3 [15]
- SPIDER, EMAN [15]
- TOMOALIGN [15]
- CHIMERA, FLEX-EM [14]
- IPET, FETR, SPIDER, IMOD, EMAN, AND, EMAN2 [14]
- SPIDER, IHRSR [14]
- DIREX [13]
- IMOD, RAPTOR, PROTOMO [13]
Microscope
- FEI TITAN KRIOS [22477]
- FEI TALOS ARCTICA [1649]
- TFS KRIOS [1616]
- FEI TECNAI F20 [1517]
- FEI POLARA 300 [1150]
- TFS GLACIOS [673]
- FEI TECNAI SPIRIT [622]
- FEI TECNAI F30 [475]
- FEI TITAN [431]
- ZEISS LIBRA120PLUS [407]
- FEI TECNAI ARCTICA [339]
- FEI TECNAI 12 [266]
- FEI TECNAI 20 [265]
- FEI/PHILIPS CM200FEG [263]
- JEOL CRYO ARM 300 [257]
- JEOL 3200FSC [198]
- JEOL 2200FS [182]
- JEOL 2010F [116]
- FEI/PHILIPS CM300FEG/T [103]
- TFS TALOS [87]
- JEOL 2100 [74]
- JEOL 2100F [73]
- JEOL 3100FFC [58]
- JEOL 3200FS [50]
- TFS TALOS F200C [50]
- FEI/PHILIPS EM420 [42]
- JEOL 1230 [42]
- JEOL CRYO ARM 200 [42]
- OTHER [42]
- FEI/PHILIPS CM120T [39]
- TFS TALOS L120C [30]
- JEOL 1400 [29]
- JEOL 3000SFF [28]
- FEI/PHILIPS CM200FEG/ST [26]
- FEI/PHILIPS CM200T [26]
- JEOL 4000EX [24]
- JEOL KYOTO-3000SFF [24]
- JEOL 1200EXII [23]
- JEOL 2200FSC [19]
- JEOL 4000 [17]
- JEOL 1200EX [15]
- JEOL 1400/HR + YPS FEG [11]
- FEI/PHILIPS CM200FEG/UT [10]
- FEI/PHILIPS CM12 [8]
- FEI/PHILIPS CM300FEG/HE [8]
- JEOL 2010 [8]
- FEI TECNAI 10 [7]
- FEI/PHILIPS CM300FEG/ST [7]
- JEOL 100CX [7]
- JEOL 3100FEF [7]
- JEOL 2000EX [6]
- TFS TUNDRA [5]
- HITACHI H3000 UHVEM [4]
- JEOL 1010 [4]
- FEI TECNAI SPHERA [3]
- FEI/PHILIPS CM10 [3]
- HITACHI EF2000 [3]
- HITACHI H-9500SD [3]
- JEOL 1000EES [3]
- JEOL 1200 [3]
- FEI/PHILIPS EM400 [2]
- JEOL 2010HC [2]
- JEOL 2010HT [2]
- JEOL 2010UHR [2]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- HITACHI H7600 [1]
- JEOL 2000EXII [1]
- JEOL 2011 [1]
- ZEISS LEO912 [1]
Electron Source
Film or detector model
- GATAN K2 SUMMIT (4K X 4K) [9332]
- GATAN K3 (6K X 4K) [6758]
- GATAN K3 BIOQUANTUM (6K X 4K) [4934]
- FEI FALCON III (4K X 4K) [2221]
- GATAN K2 QUANTUM (4K X 4K) [1811]
- FEI FALCON IV (4K X 4K) [1529]
- FEI FALCON II (4K X 4K) [1421]
- GATAN ULTRASCAN 4000 (4K X 4K) [1171]
- KODAK SO-163 FILM [1076]
- TVIPS TEMCAM-F416 (4K X 4K) [798]
- FEI EAGLE (4K X 4K) [375]
- OTHER [323]
- GATAN K2 (4K X 4K) [232]
- FEI CETA (4K X 4K) [219]
- TVIPS TEMCAM-F415 (4K X 4K) [169]
- GATAN K2 BASE (4K X 4K) [162]
- DIRECT ELECTRON DE-20 (5K X 3K) [141]
- GENERIC CCD [113]
- GENERIC GATAN (4K X 4K) [111]
- GATAN ULTRASCAN 1000 (2K X 2K) [110]
- GENERIC TVIPS (4K X 4K) [77]
- FEI FALCON I (4K X 4K) [63]
- TFS FALCON 4I (4K X 4K) [63]
- FEI EAGLE (2K X 2K) [61]
- GATAN MULTISCAN [55]
- GENERIC GATAN [53]
- TVIPS TEMCAM-F816 (8K X 8K) [49]
- DIRECT ELECTRON DE-64 (8K X 8K) [44]
- TVIPS TEMCAM-F224 (2K X 2K) [37]
- DIRECT ELECTRON DE-12 (4K X 3K) [33]
- DIRECT ELECTRON DE-16 (4K X 4K) [33]
- GATAN K2 IS (4K X 4K) [25]
- TVIPS TEMCAM-F216 (2K X 2K) [20]
- GENERIC GATAN (2K X 2K) [17]
- KODAK 4489 FILM [14]
- DIRECT ELECTRON DE-10 (5K X 4K) [13]
- AGFA SCIENTA FILM [12]
- DECTRIS SINGLA (1K X 1K) [11]
- DIRECT ELECTRON APOLLO (4K X 4K) [11]
- GATAN ORIUS SC200 (2K X 2K) [11]
- GENERIC CCD (2K X 2K) [11]
- GENERIC FILM [11]
- GENERIC TVIPS [11]
- GATAN ORIUS SC1000 (4K X 2.7K) [7]
- GATAN ULTRASCAN 10000 (10K X 10K) [6]
- SIA 15C (3K X 3K) [4]
- GENERIC IMAGE PLATES [3]
- GENERIC TVIPS (2K X 2K) [3]
- DECTRIS ELA (1K X 0.5K) [2]
- GATAN ORIUS SC600 (2.7K X 2.7K) [2]
- PROSCAN TEM-PIV (2K X 2K) [1]
EMPIAR Experiment type
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [1132]
- MICROGRAPHS - SINGLE FRAME [371]
- TILT SERIES [180]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [75]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [62]
- RECONSTRUCTED VOLUMES [55]
- PICKED PARTICLES - MULTIFRAME - UNPROCESSED [19]
- PICKED PARTICLES - SINGLE FRAME - UNPROCESSED [17]
- CLASS AVERAGES [14]
- SUBTOMOGRAMS [6]
- DIFFRACTION IMAGES [3]
- PARTICLE PICKING [3]
- STITCHED MAPS [3]
- ALIGNED MOVIE FRAMES (.MRCS EXTENSION), ALIGNED-AVERAGED MICROGRAPHS (.MRC EXTENSION) AND PARTICLE COORDINATES (.BOX EXTENSION) [1]
- MICROGRAPHS - FOCAL PAIRS - CONTRAST INVERTED [1]
- MICROGRAPHS - FOCAL PAIRS - UNPROCESSED [1]
- MODEL [1]
- SOFT X-RAY TOMOGRAMS [1]